View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2466_low_1 (Length: 496)

Name: NF2466_low_1
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2466_low_1
NF2466_low_1
[»] chr6 (2 HSPs)
chr6 (18-481)||(28654939-28655411)
chr6 (21-477)||(28652754-28653222)
[»] chr8 (1 HSPs)
chr8 (18-477)||(12298736-12299206)
[»] chr2 (2 HSPs)
chr2 (18-307)||(2202718-2203014)
chr2 (398-451)||(2202570-2202623)
[»] chr5 (2 HSPs)
chr5 (18-307)||(18859824-18860121)
chr5 (398-451)||(18859676-18859729)
[»] chr1 (2 HSPs)
chr1 (18-307)||(24318888-24319185)
chr1 (398-451)||(24318740-24318793)
[»] chr7 (2 HSPs)
chr7 (18-307)||(15898011-15898307)
chr7 (398-451)||(15898402-15898455)
[»] chr3 (2 HSPs)
chr3 (18-181)||(25904383-25904547)
chr3 (398-477)||(25904751-25904830)


Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 28654939 - 28655411
Alignment:
Q  18 atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28654939 atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaaac 28655038  T
Q  118 tcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacattc----ctttgatcaattctttcatataca 213  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||      |||||||||||| ||| | |||||    
T  28655039 tcataatcatagaaaaatgaatgtttcatcttatgttttcttctaaacttatcaataagcatatttacatcagagtctttgatcaatttttttaaataca 28655138  T
Q  214 ttgaataattttgaaaatctct--gtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat--gc 309  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||    
T  28655139 ttgaataattttgaaaatctctttgtgtgcatcatatatcgtcataactcccaactcgctcattcactaattgataagcttttgaagtctccacattagc 28655238  T
Q  310 tctactgggagaaaacaataaattttaatgagcactgttttcactccttgtcgatcttgacattgtttccttctaggtgtgacaa-tgtatgtgaatgac 408  Q
    ||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |    
T  28655239 tctactgcgagaaaacaataaattctaatgagcactgttttcattccttgccgatcttgacattgtttccttctaggtgtgacaagtgtatgtgaatggc 28655338  T
Q  409 cttcataaaattttgagacatcatatttactctcaatagttcttttgaatacaatctttgcattacatctctg 481  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||| ||||||||    
T  28655339 cttcataaaattttgagacgtcatatttactctcaataattcttctgaaaacaatctttgcattgcatctctg 28655411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 477
Target Start/End: Complemental strand, 28653222 - 28652754
Alignment:
Q  21 ttgtgtcaaatgaaatcacatctccaaacaaagagtaattatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcagactca 120  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||  || ||  |||||||||||||| | |||||| |||  || ||||| |    
T  28653222 ttgtgtcaaatgaaatcatatctccaaacaaagagtaattttccgacaaatgtcatcaactcaaaatacatatttcattttcccatcatcattagactaa 28653123  T
Q  121 taatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacatt----cctttgatcaattctttcatatacattg 216  Q
    |||| ||||||||| ||||| ||||| | ||| | ||||||||| |||||||||||||||| | ||||     |||| | || ||||||   || | |||    
T  28653122 taataatagaaaaatgaatgattcatttcatgttatcttctaaaattatcaataaacatatatgcattagagtctttaaccagttctttttaatcccttg 28653023  T
Q  217 aataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat--gctct 312  Q
    ||||||||||||||||||  |||||||| | ||||| |||||||||| |||| ||||| || | |||||||||| ||||||| |||  | |||  | |||    
T  28653022 aataattttgaaaatctctatgtgtgcatcctatatggtcataactctcaactcgctcctttagtaattgataaacttttgatgtcctcgcattagttct 28652923  T
Q  313 actgggagaaaacaataaattttaatgagcactgttttcactccttgtcgatcttgac-attgtttccttctaggtgtgacaa-tgtatgtgaatgacct 410  Q
    | ||  || ||| ||||||||   || | || ||||| ||||||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| ||    
T  28652922 attgtaaggaaataataaattcatattaacaatgtttacactccttgtcgatcttaacaattgtttcttcctaggtgtgacaagtgtatgtgaatgaact 28652823  T
Q  411 tcataaa--attttgagacatcatatttactctcaatagttcttttgaatacaatctttgcattacatc 477  Q
    |||||||   |||| |||| |||| ||||| | ||||  |||||||||| |||||| || |||||||||    
T  28652822 tcataaatttttttaagacttcatgtttacccccaatgcttcttttgaaaacaatccttacattacatc 28652754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 12298736 - 12299206
Alignment:
Q  18 atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatc-cgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga 116  Q
    |||| |||||||||||||  ||||||||||||||||| ||||| |  |||| ||||| || |  |||||| |||||||| |  |||||| || ||||||     
T  12298736 atgtagtgtcaaatgaaactacatctccaaacaaagaataattttttcgactaatgccatcagcccaaaacacatattttaacttccctacattatcagt 12298835  T
Q  117 ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacattc----ctttgatcaattctttcatatac 212  Q
    | |||| |||||||| || ||||  || || | ||| |||||| |||| || ||||| ||||||||| ||||     ||||||||||||||||||||| |    
T  12298836 cacatactcatagaagaatgaattattaatttcatgttttcttttaaaattttcaatgaacatatttgcatttgaatctttgatcaattctttcatattc 12298935  T
Q  213 attgaataattttgaaaatctct--gtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat--g 308  Q
     ||||| | ||||| ||||||||  ||||||| | |||||  ||||||||||||||   ||| |||| || ||||||  |||| |||||  ||| ||  |    
T  12298936 cttgaaaatttttgtaaatctctttgtgtgcatcctatattttcataactcccaacttactccttcaatatttgatagcctttcgaagtgcccatattag 12299035  T
Q  309 ctctactgggagaaaacaataaattttaatgagcactgttttcactccttgtcgatcttgacat-tgtttccttctaggtgtgacaa-tgtatgtgaatg 406  Q
    ||||| ||  || |||||||||||||| |||| || ||||  ||||||||   || ||| | |  |||||| ||||||||| ||||| ||| ||||||||    
T  12299036 ctctattgcaagcaaacaataaatttttatgaacattgttgacactccttacagaccttaataactgtttctttctaggtgagacaagtgtgtgtgaatg 12299135  T
Q  407 accttcataaaattttgagacatcatatttactctcaatagttcttttgaatacaatctttgcattacatc 477  Q
    ||| ||||||||||| ||||  ||| |||||| ||||  |||||| ||||| |||||| |||| |||||||    
T  12299136 accatcataaaatttggagatttcaaatttaccctcatcagttctcttgaacacaatccttgctttacatc 12299206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 2203014 - 2202718
Alignment:
Q  18 atgttgtgtcaaatgaaatcacatctccaaacaaagagtaa-ttatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga 116  Q
    |||||||||||||||||| |||||||||||||||||||||| || | |||||||| | || |  |||||| |||| ||| | |||||||||| | ||||     
T  2203014 atgttgtgtcaaatgaaaccacatctccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatgtttcaatttcccttcattgtcagc 2202915  T
Q  117 ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacat----tcctttgatcaattctttcatatac 212  Q
     |||||||||||||| || ||| | || ||||   | ||||||||||| |||||||| ||||||| | |||      |||||||||||||||||| ||      
T  2202914 ttcataatcatagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatctgcatcagagtctttgatcaattctttcaaattt 2202815  T
Q  213 attgaataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat 307  Q
     ||||||| ||||| |||||||  |||||||| | |||||  |||||||| || ||| |||| |||| || |||||||  |||||||||| ||||||    
T  2202814 cttgaatagttttgcaaatctctttgtgtgcatcctatattttcataacttccgacctgctccttcattatttgataactttttgaagtccccacat 2202718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 2202623 - 2202570
Alignment:
Q  398 atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttct 451  Q
    ||||||||||||||||||||| |||||||| ||||||||||  |||||||||||    
T  2202623 atgtgaatgaccttcataaaagtttgagacttcatatttaccatcaatagttct 2202570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 18860121 - 18859824
Alignment:
Q  18 atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatc-cgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga 116  Q
    |||||||||||||||||| |||||||||||||||||||||||| |  |||||||| | || |  |||||| |||| ||| |  ||||||||| | ||||     
T  18860121 atgttgtgtcaaatgaaaccacatctccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatgtttcaacttcccttcattgtcagc 18860022  T
Q  117 ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacat-----tcctttgatcaattctttcatata 211  Q
     |||||||||||||| || ||| | || ||||   | ||||||||||| |||||||| ||||||||| |||     || || |||||||||||||| ||     
T  18860021 ttcataatcatagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatttgcatcagagtctttggatcaattctttcaaatt 18859922  T
Q  212 cattgaataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat 307  Q
      ||||||| ||||| |||||||  |||||||| | |||||  |||||||| || ||| |||| |||| || |||||||  |||||||||| ||||||    
T  18859921 tcttgaatagttttgcaaatctctttgtgtgcatcctatattttcataacttccgacctgctccttcattatttgataactttttgaagtccccacat 18859824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 18859729 - 18859676
Alignment:
Q  398 atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttct 451  Q
    ||||||||||||||||||||| |||||||| ||||||||||  |||||||||||    
T  18859729 atgtgaatgaccttcataaaagtttgagacttcatatttaccatcaatagttct 18859676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 24319185 - 24318888
Alignment:
Q  18 atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatc-cgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga 116  Q
    |||||||||||||||||| |||||||||||||||||||||||| |  |||||||| | || |  |||||| |||| ||| |  ||||||||| | ||||     
T  24319185 atgttgtgtcaaatgaaaccacatctccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatgtttcaacttcccttcattgtcagc 24319086  T
Q  117 ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacat-----tcctttgatcaattctttcatata 211  Q
     |||||||||||||| || ||| | || ||||   | ||||||||||| |||||||| ||||||||| |||     || || |||||||||||||| ||     
T  24319085 ttcataatcatagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatttgcatcagagtctttggatcaattctttcaaatt 24318986  T
Q  212 cattgaataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat 307  Q
      ||||||| ||||| |||||||  |||||||| | |||||  |||||||| || ||| |||| |||| || |||||||  |||||||||| ||||||    
T  24318985 tcttgaatagttttgcaaatctctttgtgtgcatcctatattttcataacttccgacctgctccttcattatttgataactttttgaagtccccacat 24318888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 24318793 - 24318740
Alignment:
Q  398 atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttct 451  Q
    ||||||||||||||||||||| |||||||| ||||||||||  |||||||||||    
T  24318793 atgtgaatgaccttcataaaagtttgagacttcatatttaccatcaatagttct 24318740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 15898011 - 15898307
Alignment:
Q  18 atgttgtgtcaaatgaaatcacatctccaaacaaagagtaattatc-cgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga 116  Q
    |||||||||||||||||| ||||| |||||||||||||||||| |  |||||||| | || |  |||||| |||| ||| |  ||||||||| | ||||     
T  15898011 atgttgtgtcaaatgaaaccacatttccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatgtttcaacttcccttcattgtcagc 15898110  T
Q  117 ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatatttacat----tcctttgatcaattctttcatatac 212  Q
     |||||||||||||| || ||| | || ||||   | ||||||||||| |||||||| ||||||| | |||      |||||||||||||||||| ||      
T  15898111 ttcataatcatagaagaatgaagggtttatctctcgttttcttctaaaattatcaatgaacatatctgcatcagagtctttgatcaattctttcaaattt 15898210  T
Q  213 attgaataattttgaaaatctc--tgtgtgcaacatatatcgtcataactcccaacccgctcattcactaattgataagcttttgaagtctccacat 307  Q
     ||||||| ||||| |||||||  |||||||| | |||||  |||||||| || ||| | || |||| || |||||||  |||||||||| ||||||    
T  15898211 cttgaatagttttgcaaatctctttgtgtgcatcctatattttcataacttccgacctggtccttcattatttgataactttttgaagtccccacat 15898307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 15898402 - 15898455
Alignment:
Q  398 atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttct 451  Q
    ||||||||||||||||||||| |||||||| ||||||||||  |||||||||||    
T  15898402 atgtgaatgaccttcataaaagtttgagacttcatatttaccatcaatagttct 15898455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 25904383 - 25904547
Alignment:
Q  18 atgttgtgtcaaatgaaatcacatctccaaacaaagagtaa-ttatccgacaaatgcaataaatccaaaatacatatttaagtttcccttcactatcaga 116  Q
    ||||||| |||||||||| |||||||||||||||||||||| || | |||||||| | || |  |||||| |||| ||| || ||||||| || ||||      
T  25904383 atgttgtatcaaatgaaaccacatctccaaacaaagagtaattttttcgacaaattccatcagcccaaaacacatttttcagcttccctttaccatcaac 25904482  T
Q  117 ctcataatcatagaaaaacgaatgcttcatcttatgatttcttctaaacttatcaataaacatat 181  Q
     || |||||||||||||| ||| | || ||||   | ||||||||||| ||||||||||||||||    
T  25904483 ttcttaatcatagaaaaatgaagggtttatctcccgttttcttctaaaattatcaataaacatat 25904547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 398 - 477
Target Start/End: Original strand, 25904751 - 25904830
Alignment:
Q  398 atgtgaatgaccttcataaaattttgagacatcatatttactctcaatagttcttttgaatacaatctttgcattacatc 477  Q
    ||||||||||||||||||||| |||||||| ||| ||||||  ||||||||||| ||||| |||||  ||||||||||||    
T  25904751 atgtgaatgaccttcataaaactttgagacttcaaatttaccatcaatagttctcttgaaaacaattcttgcattacatc 25904830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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