View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2466_low_2 (Length: 490)

Name: NF2466_low_2
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2466_low_2
NF2466_low_2
[»] scaffold0440 (2 HSPs)
scaffold0440 (375-460)||(14515-14600)
scaffold0440 (238-287)||(14378-14427)
[»] chr8 (3 HSPs)
chr8 (379-431)||(25456687-25456739)
chr8 (238-285)||(25456833-25456880)
chr8 (436-473)||(25456616-25456653)


Alignment Details
Target: scaffold0440 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 375 - 460
Target Start/End: Original strand, 14515 - 14600
Alignment:
Q  375 ccaacctttaattgaacgatggcaatgaacgaaagagaaaatgaagaagaaacgatggagcagaagaaaatcaaacaaagtcgtat 460  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14515 ccaacctttaattgaacgatggctatgaacgaaagagaaaatgaagaagaaacgatggaacagaagaaaatcaaacaaagtcgtat 14600  T

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Target: scaffold0440; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 14378 - 14427
Alignment:
Q  238 atatcacgcatacaaaactcaatttctcaatcgactaagctggatgagca 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378 atatcacgcatacaaaactcaatttctcaatcgactaagctggatgagca 14427  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 25456739 - 25456687
Alignment:
Q  379 cctttaattgaacgatggcaatgaacgaaagagaaaatgaagaagaaacgatg 431  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25456739 cctttaattgaacgatggcgatgaacgaaagagaaaatgaagaagaaacgatg 25456687  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 25456880 - 25456833
Alignment:
Q  238 atatcacgcatacaaaactcaatttctcaatcgactaagctggatgag 285  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25456880 atatcacgcatacaaaactcaatttctcattcgactaagctggatgag 25456833  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 25456653 - 25456616
Alignment:
Q  436 agaagaaaatcaaacaaagtcgtataacctgcctatat 473  Q
    |||||||||| |||||||||||||||||||||||||||    
T  25456653 agaagaaaatgaaacaaagtcgtataacctgcctatat 25456616  T

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