View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466_low_5 (Length: 294)
Name: NF2466_low_5
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 18790786 - 18791039
Alignment:
| Q |
13 |
aaaggcagaaatggaaatcactctgatcatgatcccatgatttttggaaaaataaaaaggaaaccttgttgtgagtcttatgaatcataaagaccggaaa |
112 |
Q |
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| T |
18790786 |
aaaggcagaaatggaaatcactctaatcatgatcccatgatttttggagaaataaaaaggaaaccttgttgtgagttttctgaatcataaagaccggaaa |
18790885 |
T |
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| Q |
113 |
ggatattttgagttttcaggcgatcaaaggcacgcacaaatgttcaatcaaaccggcaatcaacccgatgaatatattggttaactggttcattggtcga |
212 |
Q |
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| T |
18790886 |
ggatattttgagttttgaggagatcaaaggcacgcataaatgttcaatcagaccggcaatcaacccgatgaatatattagttaactggtttattggtc-- |
18790983 |
T |
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| Q |
213 |
accactgaatcgctgtgtctaaactaaatgactcaatcgtaaaaatcagattttataaaaaa |
274 |
Q |
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| T |
18790984 |
------gaatcactgtgtctaaactaaatgactcaatcgtaaaaatcagattttataaaaaa |
18791039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 18782152 - 18782305
Alignment:
| Q |
15 |
aggcagaaatggaaatcactctgatcatgatcccatgatttttggaaaaataaaaaggaaaccttgttgtgagtcttatgaatcata----aagaccgg- |
109 |
Q |
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| T |
18782152 |
aggcagtaatggaaatcagtctaatcatgatcccatgatttttttagaaataaaatggaaaccttcttgtgagttttctgaattataaatcaatacagga |
18782251 |
T |
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| Q |
110 |
aaaggatattttgagttttcaggcgatcaaaggcacgcacaaatgttcaatcaaa |
164 |
Q |
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| T |
18782252 |
aaaggata-tttgagttttccggagatcaaaggcaccccaaaatgttcaatcaaa |
18782305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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