View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2466_low_6 (Length: 266)
Name: NF2466_low_6
Description: NF2466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2466_low_6 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 22069477 - 22069226
Alignment:
| Q |
15 |
ctgtgaaggacacttccatgcaagtcctgatatacatattgtatgatacaattgtgcggactgcatcttgtgtagttctattaaggtgcagtttggcgaa |
114 |
Q |
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| T |
22069477 |
ctgtgaaggacatttccgtgccagtcctggaatagatattgtttgatacaattgtgctgactgcatcttgtgtagttctattaaggtgcaatttggcgaa |
22069378 |
T |
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| Q |
115 |
ggaggtttcagatatgaggtacttccatgacttactcacacacttcagccgcatgagagatttgatagaaaggaaggaaagcacttcggcaataagttca |
214 |
Q |
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| T |
22069377 |
ggagggttcagatatgaggtacttccatgacttgctcacacacttcagccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttca |
22069278 |
T |
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| Q |
215 |
tctgggaggaatacctgcaactgagatggagggaggagattcatgttggagt |
266 |
Q |
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| T |
22069277 |
ccggggaggaatacctgcaactgagatggagggaggagattcatgttggagt |
22069226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 49 - 266
Target Start/End: Complemental strand, 22062983 - 22062766
Alignment:
| Q |
49 |
catattgtatgatacaattgtgcggactgcatcttgtgtagttctattaaggtgcagtttggcgaaggaggtttcagatatgaggtacttccatgactta |
148 |
Q |
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| T |
22062983 |
catatggtatgatacaattgtgcggactgcatcttgtgtagttctgttaaggtgcagtttggcgaaggagggttcagatatgaggtacttccatgacttg |
22062884 |
T |
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| Q |
149 |
ctcacacacttcagccgcatgagagatttgatagaaaggaaggaaagcacttcggcaataagttcatctgggaggaatacctgcaactgagatggaggga |
248 |
Q |
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| T |
22062883 |
ctcacacacttcagccgcatgagagatttgacaggaaggaaggaaagcacttcgacaataagttcaccggggaggaatacctgcaactgagatggaggga |
22062784 |
T |
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| Q |
249 |
ggagattcatgttggagt |
266 |
Q |
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| T |
22062783 |
ggagattcatgatggagt |
22062766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 22087936 - 22087726
Alignment:
| Q |
56 |
tatgatacaattgtgcggactgcatcttgtgtagttctattaaggtgcagtttggcgaaggaggtttcagatatgaggtacttccatgacttactcacac |
155 |
Q |
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| T |
22087936 |
tatgatacaaatctgcggactgcattttgtgtagttctgttaaggtgcaatttggcgaagtagggttcggacatgaggtacttccatgacttactcaaac |
22087837 |
T |
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| Q |
156 |
acttcagccgcatgagagatttgatagaaaggaaggaaagcacttcggcaataagttcatctgggaggaatacctgcaactgagatggagggaggagatt |
255 |
Q |
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| T |
22087836 |
acttcagccgcatgagagatttgacagaaaggaaggaaagcacttctgtgataagttcgtcggggaggaatgcctgcaactgagatggagggaggagatt |
22087737 |
T |
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| Q |
256 |
catgttggagt |
266 |
Q |
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| T |
22087736 |
catattggagt |
22087726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 22080165 - 22079984
Alignment:
| Q |
48 |
acatattgtatgatacaattgtgcggactgcatcttgtgtagttctattaaggtgcagtttggcgaaggaggtttcagatatgaggtacttccatgactt |
147 |
Q |
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| T |
22080165 |
acatattgtatgatacaaatttgcggactgcatcttgtttagttctcttaaggtgcaatttgacgaaggagggttcggatatgaggtacttccatgattt |
22080066 |
T |
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| Q |
148 |
actcacacacttcagccgcatgagagatttgatagaaaggaaggaaagcacttcggcaataagttcatctgggaggaatacc |
229 |
Q |
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| T |
22080065 |
actcacacacttcagccgtatgagagattggacaggaaggaaggaaagcacttcgacaataagttcgtcagggaggaatacc |
22079984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 6865602 - 6865642
Alignment:
| Q |
128 |
atgaggtacttccatgacttactcacacacttcagccgcat |
168 |
Q |
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| T |
6865602 |
atgagggacttccatgacttactcacatacttcagtcgcat |
6865642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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