View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467-Insertion-1 (Length: 899)
Name: NF2467-Insertion-1
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467-Insertion-1 |
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| [»] scaffold1396 (1 HSPs) |
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| [»] scaffold0658 (1 HSPs) |
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Alignment Details
Target: scaffold1396 (Bit Score: 736; Significance: 0; HSPs: 1)
Name: scaffold1396
Description:
Target: scaffold1396; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 8 - 899
Target Start/End: Complemental strand, 1660 - 755
Alignment:
| Q |
8 |
ataactgcaggaatcacatttgtgaaattgttcaatggaagtatagacagtcctaggttgcttcctaatattactgatatgacatctatttggaatctct |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1660 |
ataactgcaggaatcacatttgtgaaattgtttaatggaagtatagacagtcctaggttgcttcctaatattactgatatgacatctatttggaatctct |
1561 |
T |
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| Q |
108 |
ttacagcagttccagttcttgtgacagcatttgtttgtcattataatggtaagtaagctacctcaatgtgtacttttatttcaaaatattaagtttactc |
207 |
Q |
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| T |
1560 |
ttacagcagttccagttcttgtgacagcatttgtttgtcattataatggtaagtaagctacctcaatgtgtactttcatttcaaaatatgaagtttactc |
1461 |
T |
|
| Q |
208 |
ttgttgtgaagacccttattggtgaactttaaagagtttaattttgatacacagtcggtatnnnnnnntttagactaccga-------caaatcacaact |
300 |
Q |
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| T |
1460 |
ttgttgtgaagacccttattggtgaactttaaagagtttaattttgatacacagtcggtataaaaaaatttagactgccaagtgccaacaaatcacaact |
1361 |
T |
|
| Q |
301 |
aatcatatgcaacattagaaatagttatgataaaagtcaaactgtctaatgatatgacgattttgattgattgacatcgtnnnnnnntctttacactaac |
400 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||| ||| ||||||||||||| |
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| T |
1360 |
aatcatatgcgacattagaaatagttatgataaatgtcaaactgtttaatgatatgaccattatgattgattgacaacgtaaaaaa-tctttacactaac |
1262 |
T |
|
| Q |
401 |
ggt-----ctcaaatgttgttattttgagtattggattagtctctgaatacatactttatgtcaacttgaaatcttcttaagaatctatcagcaaaaca- |
494 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1261 |
ggttcaacctcaaatgttgttattttgagtattggattagtctctgaatacatactttatgtcaacttgaaatcttcttaagaatctatcagcaaaacaa |
1162 |
T |
|
| Q |
495 |
--tctctttgctgtactttgaaattacaaggtcgaactcttactacttagatgacacttccccgactgaactctgaaatttgatattgcaaataatagta |
592 |
Q |
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| T |
1161 |
catctctttgctgtactttgaagttacaaggtcgaactcttactacttagatgacacttccccgactgaactctgaaatttgatattgcaaataatagta |
1062 |
T |
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| Q |
593 |
ctgagaaatttgatgtgcttgaataatatatattttaacttaagtattatcctttgcagtgcatacaatagacaatgaacttggagactcttcaccaata |
692 |
Q |
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| T |
1061 |
ctgagaaatttgatgtgcttgaataatatatattttaacttaagtattatcctttgcagtgcatacaatagacaatgaacttggagactcttcaccaatt |
962 |
T |
|
| Q |
693 |
caaccagttataagtgcatcacttgttctatgttctagtatatacattcttacagctctatttgggttcctactatttggcgagtcaactcttgatgatg |
792 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
961 |
caaccagttataagtgcatcattggttctatgttctagtatatacattcttacagctctatttgggttcctactatttggcgagtcaactcttgatgatg |
862 |
T |
|
| Q |
793 |
tgctagccaactttgatactgatcttggcatcccttatagcaatattctcaacgacgtcgttcgtatcagctacgccctccatctcatgcttgttttccc |
892 |
Q |
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| T |
861 |
tgctagccaactttgatactgatcttggcatcccttatagcaatattctcaatgacgtcgttcgtatcagctacgccctccatctcatgcttgttttccc |
762 |
T |
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| Q |
893 |
ggttatc |
899 |
Q |
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||||||| |
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| T |
761 |
ggttatc |
755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 179; Significance: 4e-96; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 717 - 899
Target Start/End: Complemental strand, 8709 - 8527
Alignment:
| Q |
717 |
gttctatgttctagtatatacattcttacagctctatttgggttcctactatttggcgagtcaactcttgatgatgtgctagccaactttgatactgatc |
816 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8709 |
gttctatgttctagtatatacattcttacagctctatttgggttcctactatttggcgagtcaactcttgatgatgtgctagccaactttgatactgatc |
8610 |
T |
|
| Q |
817 |
ttggcatcccttatagcaatattctcaacgacgtcgttcgtatcagctacgccctccatctcatgcttgttttcccggttatc |
899 |
Q |
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| T |
8609 |
ttggcatcccttatagcaatattctcaatgacgtcgttcgtatcagctacgccctccatctcatgcttgttttcccggttatc |
8527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 753 - 820
Target Start/End: Original strand, 5963655 - 5963722
Alignment:
| Q |
753 |
tttgggttcctactatttggcgagtcaactcttgatgatgtgctagccaactttgatactgatcttgg |
820 |
Q |
| |
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||||||||||| |||||||| || |||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
5963655 |
tttgggttccttctatttggtgaaggaactcttgatgatgtgcttgccaattttgatactgattttgg |
5963722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 15867618 - 15867675
Alignment:
| Q |
319 |
aaatagttatgataaaagtcaaactgtct-aatgatatgacgattttgattgattgac |
375 |
Q |
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| T |
15867618 |
aaatagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattgac |
15867675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 1132214 - 1132153
Alignment:
| Q |
315 |
ttagaaatagttatgataaaagtcaaa-ctgtctaatgatatgacgattttgattgattgac |
375 |
Q |
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|||||| |||||||||||||||||||| | ||||||||| ||||| || |||||||||||| |
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| T |
1132214 |
ttagaattagttatgataaaagtcaaatgtttctaatgatctgacggttatgattgattgac |
1132153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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