View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2467-Insertion-10 (Length: 109)

Name: NF2467-Insertion-10
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2467-Insertion-10
NF2467-Insertion-10
[»] chr8 (3 HSPs)
chr8 (8-109)||(41787045-41787146)
chr8 (25-72)||(5870396-5870443)
chr8 (25-79)||(40151580-40151634)
[»] chr3 (3 HSPs)
chr3 (28-79)||(10020172-10020223)
chr3 (25-69)||(32930742-32930787)
chr3 (17-69)||(31264811-31264862)
[»] chr4 (7 HSPs)
chr4 (12-80)||(13668830-13668898)
chr4 (12-80)||(13681687-13681755)
chr4 (9-79)||(9694389-9694458)
chr4 (35-63)||(29035962-29035990)
chr4 (35-63)||(29048097-29048125)
chr4 (49-80)||(281987-282018)
chr4 (25-80)||(13229858-13229913)
[»] chr7 (3 HSPs)
chr7 (17-76)||(7192763-7192822)
chr7 (29-69)||(12421723-12421763)
chr7 (27-75)||(26853810-26853858)
[»] chr2 (10 HSPs)
chr2 (9-79)||(17229213-17229283)
chr2 (28-73)||(31053450-31053495)
chr2 (42-82)||(31203167-31203207)
chr2 (12-79)||(13365883-13365950)
chr2 (50-79)||(5788863-5788892)
chr2 (7-79)||(12454016-12454088)
chr2 (12-99)||(2336649-2336736)
chr2 (29-80)||(4638050-4638101)
chr2 (25-80)||(5788065-5788120)
chr2 (28-79)||(13091833-13091884)
[»] chr6 (1 HSPs)
chr6 (28-79)||(20117199-20117250)
[»] chr5 (2 HSPs)
chr5 (33-80)||(19910580-19910627)
chr5 (49-80)||(33013891-33013922)
[»] scaffold0159 (2 HSPs)
scaffold0159 (50-79)||(33236-33265)
scaffold0159 (25-80)||(32438-32493)
[»] scaffold0036 (1 HSPs)
scaffold0036 (35-80)||(49428-49473)
[»] chr1 (4 HSPs)
chr1 (34-82)||(93387-93435)
chr1 (25-69)||(1187423-1187467)
chr1 (19-74)||(33862492-33862547)
chr1 (19-74)||(33918375-33918430)
[»] scaffold0380 (1 HSPs)
scaffold0380 (28-79)||(14570-14621)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 5e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 41787045 - 41787146
Alignment:
Q  8 ttgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaatcttcactttactaatcaatcaatatga 107  Q
    |||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41787045 ttgaacactacatcttgactcaaaaatttaagacattgagtttatgagtcatctcacttatatgttgttcaatcttcactttactaatcaatcaatatga 41787144  T
Q  108 ca 109  Q
    ||    
T  41787145 ca 41787146  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 5870443 - 5870396
Alignment:
Q  25 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgt 72  Q
    ||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  5870443 actcaaaattttaagatattgagtttatgggttctctcacttatatgt 5870396  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 40151580 - 40151634
Alignment:
Q  25 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||  ||||||||||||||  |||| |||| |||||||||||||||||||    
T  40151580 actcaaaacattaagatattgagtaaatgaatcatttcacttatatgttgttcaa 40151634  T

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Target: chr3 (Bit Score: 44; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 10020223 - 10020172
Alignment:
Q  28 caaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  10020223 caaaatcttaagatattaagtatatgagtcatctcacttatatgttgttcaa 10020172  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 32930787 - 32930742
Alignment:
Q  25 actcaaaatct-taagatattgagtttatgagtcatctcacttata 69  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  32930787 actcaaaatctctaagacattgagtttatgagtcatctcacttata 32930742  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 31264862 - 31264811
Alignment:
Q  17 acatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttata 69  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||| |||||    
T  31264862 acatctttactaaaaatcttaa-atattgagtttatgagtcatctcatttata 31264811  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 13668830 - 13668898
Alignment:
Q  12 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 80  Q
    ||||||| |||  ||||||||| ||||||  |||||| ||| |||||||||||||||||||||||||||    
T  13668830 acactacgtctaaactcaaaatattaagactttgagtatattagtcatctcacttatatgttgttcaat 13668898  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 13681687 - 13681755
Alignment:
Q  12 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 80  Q
    ||||||| |||  ||||||||| ||||||  |||||| ||| |||||||||||||||||||||||||||    
T  13681687 acactacgtctaaactcaaaatattaagactttgagtatattagtcatctcacttatatgttgttcaat 13681755  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 9694389 - 9694458
Alignment:
Q  9 tgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||| |||| || |||||||||||||||| |||  | ||||||||||||||||||||| | |||||||    
T  9694389 tgaacaccacattttaactcaaaatcttaagacattt-gattatgagtcatctcacttataagatgttcaa 9694458  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 29035990 - 29035962
Alignment:
Q  35 ttaagatattgagtttatgagtcatctca 63  Q
    |||||||||||||||||||||||||||||    
T  29035990 ttaagatattgagtttatgagtcatctca 29035962  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 29048125 - 29048097
Alignment:
Q  35 ttaagatattgagtttatgagtcatctca 63  Q
    |||||||||||||||||||||||||||||    
T  29048125 ttaagatattgagtttatgagtcatctca 29048097  T

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Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 282018 - 281987
Alignment:
Q  49 ttatgagtcatctcacttatatgttgttcaat 80  Q
    ||||||||||||||||| ||||||||||||||    
T  282018 ttatgagtcatctcactaatatgttgttcaat 281987  T

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Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 13229913 - 13229858
Alignment:
Q  25 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 80  Q
    |||||||| |||||| | ||| || ||| |||| ||||||||||||||||||||||    
T  13229913 actcaaaaccttaaggttttgggtatattagtcctctcacttatatgttgttcaat 13229858  T

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Target: chr7 (Bit Score: 36; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 7192822 - 7192763
Alignment:
Q  17 acatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgtt 76  Q
    ||||||| |||||||| ||||||| ||||||||||||| | || ||||||||||||||||    
T  7192822 acatctttactcaaaaccttaagacattgagtttatgatttatttcacttatatgttgtt 7192763  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 12421723 - 12421763
Alignment:
Q  29 aaaatcttaagatattgagtttatgagtcatctcacttata 69  Q
    |||||||||| ||||||||||||||| |||||||| |||||    
T  12421723 aaaatcttaaaatattgagtttatgaatcatctcagttata 12421763  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 26853858 - 26853810
Alignment:
Q  27 tcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgt 75  Q
    |||||| |||||| ||||  ||||||||||| |||||||||||||||||    
T  26853858 tcaaaaccttaagttattaggtttatgagtcctctcacttatatgttgt 26853810  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 17229213 - 17229283
Alignment:
Q  9 tgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||| ||||||| | | |||| |||||| ||| ||||||||| ||||| |||||||||||||||||||    
T  17229213 tgaacaccacatcttaatttaaaaccttaaggtatcgagtttatgggtcatttcacttatatgttgttcaa 17229283  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 31053495 - 31053450
Alignment:
Q  28 caaaatcttaagatattgagtttatgagtcatctcacttatatgtt 73  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||||    
T  31053495 caaaaccttgagatattgagtttatgggtcatctcacttatatgtt 31053450  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 31203167 - 31203207
Alignment:
Q  42 attgagtttatgagtcatctcacttatatgttgttcaatct 82  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  31203167 attgagtttatgagtcatctctcttataagttgttcaatct 31203207  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 13365950 - 13365883
Alignment:
Q  12 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
    |||| |||||||||| ||||| |||||   ||||||||||||  |||||||| |||||||||||||||    
T  13365950 acaccacatcttgacacaaaaccttaatgcattgagtttatggatcatctcatttatatgttgttcaa 13365883  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 5788863 - 5788892
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||||||||||||||||||||||||    
T  5788863 tatgagtcatctcacttatatgttgttcaa 5788892  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 12454088 - 12454016
Alignment:
Q  7 attgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||| || |||| | |||||| ||||| | |||   |||||| |||||||||||||||||||||||||    
T  12454088 attgaacaccacttcttcaatcaaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaa 12454016  T

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Target: chr2; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 2336736 - 2336649
Alignment:
Q  12 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaatcttcactttactaatcaat 99  Q
    |||| ||||||| || ||||||||||||  ||||| |||||| ||| |||||||||||   ||||||| || |||||| |||| ||||    
T  2336736 acaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttctaagcaat 2336649  T

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Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 4638101 - 4638050
Alignment:
Q  29 aaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 80  Q
    |||| |||||||||||| |||||||| | || || |||||||||||||||||    
T  4638101 aaaaccttaagatattgggtttatgaattatttcgcttatatgttgttcaat 4638050  T

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Target: chr2; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 5788065 - 5788120
Alignment:
Q  25 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 80  Q
    |||||||| |||||||  |||||| |||  |||||||||||||||||||| |||||    
T  5788065 actcaaaaccttaagactttgagtatatttgtcatctcacttatatgttgctcaat 5788120  T

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Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 13091833 - 13091884
Alignment:
Q  28 caaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
    ||||| ||||||| |||||||||||| ||  ||||| |||||||||||||||    
T  13091833 caaaaccttaagacattgagtttatgggttctctcatttatatgttgttcaa 13091884  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 20117250 - 20117199
Alignment:
Q  28 caaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||||    
T  20117250 caaaaccttaagacattgaatttatgagtactctcacttatatgttgttcaa 20117199  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 19910580 - 19910627
Alignment:
Q  33 tcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 80  Q
    ||||||| |||| ||| ||||| |||||||||||||||||||||||||    
T  19910580 tcttaaggtattaagtatatgactcatctcacttatatgttgttcaat 19910627  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 33013891 - 33013922
Alignment:
Q  49 ttatgagtcatctcacttatatgttgttcaat 80  Q
    ||||||||||||||||| ||||||||||||||    
T  33013891 ttatgagtcatctcactaatatgttgttcaat 33013922  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.00000003; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 33236 - 33265
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||||||||||||||||||||||||    
T  33236 tatgagtcatctcacttatatgttgttcaa 33265  T

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Target: scaffold0159; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 32438 - 32493
Alignment:
Q  25 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 80  Q
    |||||||| |||||||  |||||| |||  |||||||||||||||||||| |||||    
T  32438 actcaaaaccttaagactttgagtatatttgtcatctcacttatatgttgctcaat 32493  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 49428 - 49473
Alignment:
Q  35 ttaagatattgagtttatgagtcatctcacttatatgttgttcaat 80  Q
    |||||| ||||||| ||| ||||||||||||||||||||| |||||    
T  49428 ttaagacattgagtatattagtcatctcacttatatgttgctcaat 49473  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 93387 - 93435
Alignment:
Q  34 cttaagatattgagtttatgagtcatctcacttatatgttgttcaatct 82  Q
    ||||||| ||| |||||||||||| ||||| ||||| ||||||||||||    
T  93387 cttaagacattcagtttatgagtcctctcatttataggttgttcaatct 93435  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 1187423 - 1187467
Alignment:
Q  25 actcaaaatcttaagatattgagtttatgagtcatctcacttata 69  Q
    ||||||||||||||| || |||||||||| ||| |||||||||||    
T  1187423 actcaaaatcttaaggtaatgagtttatgggtcttctcacttata 1187467  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 33862492 - 33862547
Alignment:
Q  19 atcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttg 74  Q
    ||||| ||||||||||||||| | || ||| |||| ||| ||||||||||||||||    
T  33862492 atcttaactcaaaatcttaaggttttaagtatatgtgtcttctcacttatatgttg 33862547  T

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Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 33918430 - 33918375
Alignment:
Q  19 atcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttg 74  Q
    ||||| ||||||||||||||| | || ||| |||| ||| ||||||||||||||||    
T  33918430 atcttaactcaaaatcttaaggttttaagtatatgtgtcttctcacttatatgttg 33918375  T

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Target: scaffold0380 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 14621 - 14570
Alignment:
Q  28 caaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 79  Q
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T  14621 caaaatcttaagacattaaatatgtgagtcatctcatttatatgttgttcaa 14570  T

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