View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2467-Insertion-2 (Length: 840)
Name: NF2467-Insertion-2
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467-Insertion-2 |
 | |
|
| [»] scaffold0428 (6 HSPs) |
| | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 713; Significance: 0; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 7 - 799
Target Start/End: Complemental strand, 33387747 - 33386959
Alignment:
| Q |
7 |
ataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33387747 |
ataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaagctttgggtatggaggtgaagagttgcgggt |
33387648 |
T |
|
| Q |
107 |
atcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaaga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33387647 |
atcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggctccgaagtgtaagattttggcaattgaaga |
33387548 |
T |
|
| Q |
207 |
tgggacacaaccacaaccacaacaagaatcattcatgtcacaagtcataactagtacaccgagaagaaacaacagatggatcacaaaaaattcaacaagt |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387547 |
tgggacacaactacaaccacaacaagaatcattcatgtcacaagtcataactagtacaccgagaagaaacaacagatggatcacaaaaaattcaacaagt |
33387448 |
T |
|
| Q |
307 |
gataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatatcattcatann |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387447 |
gataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatatcattcat--- |
33387351 |
T |
|
| Q |
407 |
nnnnnnnccttgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtgtggatgtgccgtttggtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387350 |
tttttttccttgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtgtggatgtgccgtttggtg |
33387251 |
T |
|
| Q |
507 |
ggggttttaaatttgtgttaggttgtaatctccgtgtcgttttcgatttctgtgtctgtgtttcatagacaacaacaattttaggaacactttatcactg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387250 |
ggggttttaaatttgtgttaggttgtaatctccgtgtcgttttcgatttctgtgtctgtgtttcatagacaacaacaattttaggaacactttatcactg |
33387151 |
T |
|
| Q |
607 |
aaatctgcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcaga |
706 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387150 |
agatctgcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcaga |
33387051 |
T |
|
| Q |
707 |
tgaagtttctactgaatctcaacagnnnnnnnntctcaaacctccatatcatttgtcgattcattggtcggttcctcaacaacttttgccaac |
799 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387050 |
tgaagtttctactgaatctcaacag-aaaaaaatctcaaacctccatatcatttgtcgattcattggtcggttcctcaacaacttttgccaac |
33386959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 82 - 715
Target Start/End: Complemental strand, 33262117 - 33261510
Alignment:
| Q |
82 |
ggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccga |
181 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| ||||||| | ||| |
|
|
| T |
33262117 |
ggtatggaggtgaagagttgcgggtatcattgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcga |
33262018 |
T |
|
| Q |
182 |
agtgtaagattttggcaattgaagatgggacacaaccacaaccacaa------caagaatcattcatgtcacaagtcataactagtacaccgagaagaaa |
275 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||| ||||| |
|
|
| T |
33262017 |
aatgtaagattttggcaattgaagatgagacacaaccacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaa---- |
33261922 |
T |
|
| Q |
276 |
caacagatggatcacaaaaaattcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaa |
375 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33261921 |
-----------------aaaagtcaacaagtgataacaagtcaaacgcaaaaacaatctctgttttcaaccgcaagcagaggtactgaagataattcaaa |
33261839 |
T |
|
| Q |
376 |
agaatcttgctaactttatatcattcat-annnnnnnnncct--------tgattttgttggcagaagtgagactatgtttgtttgattttcaatttata |
466 |
Q |
| |
|
||||||||| ||| ||||||| |||||| | || ||||||||||||||||||||| ||| | ||||| ||| || || |||| | |
|
|
| T |
33261838 |
agaatcttgttaattttatattattcatcactttataaatctctgttgtatgattttgttggcagaagtgacactttctttgtctgacttgcattttaga |
33261739 |
T |
|
| Q |
467 |
ctgaattttataatttgcggtgtggatgtgccgtttggtgggggttttaaatttgtgttaggttgtaatctccgtgtcgttttcgatttctgtgtctgtg |
566 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||| ||| ||||||||||| || || |||||||| | |||||||||||| |
|
|
| T |
33261738 |
ctgaattttataatttacgg----------------ggtgggagttttaaatatgt--taggttgtaatttctttgccgttttcggtgtctgtgtctgtg |
33261657 |
T |
|
| Q |
567 |
tttcatagacaacaacaattttaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaa |
666 |
Q |
| |
|
||||||||||||||||| ||| || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33261656 |
tttcatagacaacaacattttaagtaac--tatatcattgaaatctgcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaa |
33261559 |
T |
|
| Q |
667 |
gagaagtatccgtggaggcagcagattcacctgttgcagatgaagtttc |
715 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
33261558 |
cagaagtatccgcggaggcaccagattcacctgctgcagatgaagtttc |
33261510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 298 - 799
Target Start/End: Complemental strand, 33283972 - 33283487
Alignment:
| Q |
298 |
tcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatatc |
397 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
33283972 |
tcaagaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagcggtactgaagataattcaaaagaatcttgttaattttatatt |
33283873 |
T |
|
| Q |
398 |
attcat-annnnnnnnncct--------tgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcggtg |
488 |
Q |
| |
|
|||||| | || ||||||||||||||||||||| ||| | ||||| ||| || || |||| ||||||||||||||||| ||| |
|
|
| T |
33283872 |
attcatcactttataaatctctgttgtatgattttgttggcagaagtgacactttctttgtctgacttgcattttagactgaattttataatttacgg-- |
33283775 |
T |
|
| Q |
489 |
tggatgtgccgtttggtgggggttttaaatttgtgttaggttgtaatctccgtgtcgttttcgatttctgtgtctgtgtttcatagacaacaacaatttt |
588 |
Q |
| |
|
|||||| |||||||| | ||||||||||||| | || ||| || || | |||||||||||||||||||||||||| ||| |
|
|
| T |
33283774 |
--------------ggtgggagttttaaa--tatgttaggttgtaa------tttcatttccgtttccggtgtctgtgtttcatagacaacaacatttta |
33283697 |
T |
|
| Q |
589 |
aggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagc |
688 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
33283696 |
aggaacactatatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcacc |
33283597 |
T |
|
| Q |
689 |
agattcacctgttgcagatgaagtttctactgaatctcaacagnnnnnnnntctcaaacctccatatcatttgtcgattcattggtcggttcctcaacaa |
788 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
33283596 |
ggattcacctgttgcagatgaagtttctactgaatctcaacag-aaaaaaatctcgaacctccatatcattggtcgattcattggtcggttcctcagcaa |
33283498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 88 - 292
Target Start/End: Complemental strand, 33409478 - 33409272
Alignment:
| Q |
88 |
gaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgta |
187 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||||| ||||||||||||| || |||||||| |
|
|
| T |
33409478 |
gaggtgaaaagttgcgggtatcgttgggtatgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaattccttggctcagaagtgta |
33409379 |
T |
|
| Q |
188 |
agattttggcaattgaagatgggacacaaccacaaccacaacaagaatcattcatgtcacaagtcataactagtac--accgagaagaaacaacagatgg |
285 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||| |||||||||||||||| |||||||||||||||| | | | |||||||||||||||||| |
|
|
| T |
33409378 |
agattatggcaattgaaggcgagacacaaccacaaccagaacaagaatcattcatctcacaagtcataactacttcgaagaaagaagaaacaacagatgg |
33409279 |
T |
|
| Q |
286 |
atcacaa |
292 |
Q |
| |
|
||||||| |
|
|
| T |
33409278 |
atcacaa |
33409272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 78 - 292
Target Start/End: Complemental strand, 33398576 - 33398360
Alignment:
| Q |
78 |
tttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggat |
177 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||||||| ||||| ||||||||||| | | |
|
|
| T |
33398576 |
tttgggttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacgaaagttgaacttcacaatgatgaatcatgaaaattcctttgct |
33398477 |
T |
|
| Q |
178 |
ccgaagtgtaagattttggcaattgaagatgggacacaaccacaaccacaacaagaatcattcatgtcacaagtcataactagtacaccga--gaagaaa |
275 |
Q |
| |
|
| |||||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||| |||||||||||||||| | | || ||||||| |
|
|
| T |
33398476 |
caaaagtgtaagattatggcaattgaaggcgagacacaaccacaaccagaacaagaatcattcatctcacaagtcataactacttcgaagaaggaagaaa |
33398377 |
T |
|
| Q |
276 |
caacagatggatcacaa |
292 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33398376 |
caacagatggatcacaa |
33398360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 33304071 - 33303782
Alignment:
| Q |
7 |
ataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggt |
106 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||| ||| |||| | |||||| |||| | | ||| || ||||||||||||||||||||| |
|
|
| T |
33304071 |
ataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggtgaagattttagtttggaggtgaagagttgcgggt |
33303972 |
T |
|
| Q |
107 |
atcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaaga |
206 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||||||| ||||||| ||||| ||||||| ||||| | |||||| |||| ||||||||||||||| |
|
|
| T |
33303971 |
atcggtgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttcttggctgggaagtgcaagaatttggcaattgaaga |
33303872 |
T |
|
| Q |
207 |
tgggacacaaccacaacc------acaacaagaatcattcatgtcacaagtcataactagtacaccgagaagaaacaacagatggatcacaa |
292 |
Q |
| |
|
|| |||||||||| |||| | |||||||||||||||| ||| |||||||| | | ||| |||||||||||||||||||||||||| |
|
|
| T |
33303871 |
tgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaacaacagatggatcacaa |
33303782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 28870677 - 28870819
Alignment:
| Q |
88 |
gaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgta |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || ||| |||||||||||| || ||||| | |
|
|
| T |
28870677 |
gaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaa-cacaaaaattccttggctcagaagttca |
28870775 |
T |
|
| Q |
188 |
agattttggcaattgaagatgggacacaaccacaaccacaacaa |
231 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
28870776 |
agattttggaaattgaagatgggacacaaccgcaacctcaacaa |
28870819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 599 - 772
Target Start/End: Complemental strand, 33358006 - 33357835
Alignment:
| Q |
599 |
tatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacct |
698 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||||| | ||||| ||||||||||||||||| ||||| ||||| ||||||||||| | ||||||||||| |
|
|
| T |
33358006 |
tatcactgaaatatgctttcatatcatccacagaaaaatatctcaaacctccatatcagccaaagaaacagaagaatccgtggaggtaccagattcacct |
33357907 |
T |
|
| Q |
699 |
gttgcagatgaagtttctactgaatctcaacagnnnnnnnntctcaaacctccatatcatttgtcgattcattg |
772 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
33357906 |
gttgcagatgaagtttctactgaatctccacag--aaaaaatctcgaacctccatatcattggtcgattcattg |
33357835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 33271343 - 33271219
Alignment:
| Q |
79 |
ttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| | ||||||||||||||||||| || |
|
|
| T |
33271343 |
ttgggtatggaggtgaagagttgcgggtatcgttggatatgtaaacaagacctacaagagttcaatataacaatgctgaatcacgaaaattccttggctc |
33271244 |
T |
|
| Q |
179 |
cgaagtgtaagattttggcaattga |
203 |
Q |
| |
|
| || |||||||||||||||||||| |
|
|
| T |
33271243 |
caaaatgtaagattttggcaattga |
33271219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 33644973 - 33645156
Alignment:
| Q |
7 |
ataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggt |
106 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||| || || | | | |||||||| ||||||||||||| |||| |
|
|
| T |
33644973 |
ataatctacttccctcgagattcctataatgaatttggaagaatctattttgacatttttgagagggaaggtctgggtatgaaggtgaagagttgtgggt |
33645072 |
T |
|
| Q |
107 |
atcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaat-tccttggatccgaagtgtaag |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||| ||||| ||||| | ||||||||||||| |
|
|
| T |
33645073 |
atcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag |
33645156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 33282242 - 33282144
Alignment:
| Q |
298 |
tcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatat |
396 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
33282242 |
tcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatat |
33282144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 33285113 - 33284987
Alignment:
| Q |
78 |
tttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggat |
177 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| ||||||| | |
|
|
| T |
33285113 |
tttgggtatggaggtgaacagttgtggatatcgttgggtatgtaaacaagacctacaagagttcaatttaacaatgatgaatcacaaaatatccttggct |
33285014 |
T |
|
| Q |
178 |
ccgaagtgtaagattttggcaattgaa |
204 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
33285013 |
ccgaagtgtaagattatggcaattgaa |
33284987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 33396932 - 33396806
Alignment:
| Q |
80 |
tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc |
179 |
Q |
| |
|
||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||| || |
|
|
| T |
33396932 |
tgggtatggaggtgaagagctgcaggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcatgaaaattccttggttca |
33396833 |
T |
|
| Q |
180 |
gaagtgtaagattttggcaattgaaga |
206 |
Q |
| |
|
|||||| |||||||||| ||||||||| |
|
|
| T |
33396832 |
gaagtgcaagattttggaaattgaaga |
33396806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 33398043 - 33397945
Alignment:
| Q |
298 |
tcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatat |
396 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
33398043 |
tcaacaagtgataacaagttgaccgcaaaaacaatctttgttgtcaaccgctagcagaggtactgaagataattcaaaagaattttgttaactttatat |
33397945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 33407882 - 33407756
Alignment:
| Q |
80 |
tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc |
179 |
Q |
| |
|
|||||| | |||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||||||| || |
|
|
| T |
33407882 |
tgggtacgaaggtgaagagctgcgggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaattccttggctca |
33407783 |
T |
|
| Q |
180 |
gaagtgtaagattttggcaattgaaga |
206 |
Q |
| |
|
|||||| |||||||||| ||||||||| |
|
|
| T |
33407782 |
gaagtgcaagattttggaaattgaaga |
33407756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 33408953 - 33408855
Alignment:
| Q |
298 |
tcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatat |
396 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
33408953 |
tcaacaagtgataacaagtcgaccggaaaaacaatctttgttgtcaaccgctagcagaggtactgaagataattcaaaagaattttgttaactttatat |
33408855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 33281234 - 33281091
Alignment:
| Q |
80 |
tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc |
179 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||| |||| ||| |||| || ||||| ||| |||||||| || |
|
|
| T |
33281234 |
tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctca |
33281135 |
T |
|
| Q |
180 |
gaagtgtaagattttggcaattgaagatgggacacaaccacaac |
223 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
33281134 |
gaagtgcaagattttggaaattgaagatgggacacaaccgcaac |
33281091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 9166336 - 9166080
Alignment:
| Q |
7 |
ataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggt |
106 |
Q |
| |
|
||||||||| |||| |||||||||| |||||||||||||| ||| |||||||||| || ||| | | ||||| |||| ||||||||| ||| || | |
|
|
| T |
9166336 |
ataatctacctcccccgagagtcctacgatgaatttggaaaaatccattttgacattattcggggtgaaggtttggatatgaaggtgaagacttgtggat |
9166237 |
T |
|
| Q |
107 |
atcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaaga |
206 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||| || |||| || || ||| |||| |||||||||| | || |
|
|
| T |
9166236 |
accgttgggtatgtaaacaagacctacaagagttcaactt---aacgatgaatcacgaaaaatcattggctcggacgtgcaagactttggcaatttagga |
9166140 |
T |
|
| Q |
207 |
tgggacacaaccac-----aaccacaacaagaatcattcatgtcacaagtcataactagt |
261 |
Q |
| |
|
|| || ||| |||| ||||| |||||||||||||| | ||| ||||||| |||||| |
|
|
| T |
9166139 |
tgagagacagccacaaccgaaccagaacaagaatcattcgtctcataagtcatgactagt |
9166080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 578 - 649
Target Start/End: Complemental strand, 33397836 - 33397765
Alignment:
| Q |
578 |
acaacaattttaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctc |
649 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33397836 |
acaacattttaaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcaaacctc |
33397765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 578 - 649
Target Start/End: Complemental strand, 33408747 - 33408676
Alignment:
| Q |
578 |
acaacaattttaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctc |
649 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33408747 |
acaacattttaaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcaaacctc |
33408676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 33057071 - 33056931
Alignment:
| Q |
86 |
tggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtg |
185 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| || ||| || |||||| |||||||||| ||| ||||| |
|
|
| T |
33057071 |
tggaggtcgagagttgcggttatcgttgggtatgtaaacaagatatacaagaattcaattt---aatcatgaatcacaaaaattccttaactccaaagtg |
33056975 |
T |
|
| Q |
186 |
taagattttggcaattgaagatgggacacaaccacaaccacaac |
229 |
Q |
| |
|
|| |||||| |||||||||||| |||||||||| |||| |||| |
|
|
| T |
33056974 |
caaaattttgacaattgaagatgagacacaaccagaaccgcaac |
33056931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 504 - 649
Target Start/End: Complemental strand, 33282109 - 33281973
Alignment:
| Q |
504 |
gtgggggttttaaatttgtgttaggttgtaatctccgtgtcgttttcgatttctg-tgtctgtgtttcatagacaacaacaattttaggaacactttatc |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | || |||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
33282109 |
gtgggggttttaaatttgtgttaggttgtaatttccgtgctg----cg---tctggtgtctgtgtttcatagacaacat---tttaaggaacactttatc |
33282020 |
T |
|
| Q |
603 |
actgaaatctgcattcatgtcatccacagaaataaatctcgaacctc |
649 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
33282019 |
acggaaatctgcattcatgtcatccacaagaaaaaatctcaaacctc |
33281973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 636 - 726
Target Start/End: Complemental strand, 33418550 - 33418460
Alignment:
| Q |
636 |
aaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagtttctactgaatctc |
726 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
33418550 |
aaatctcgaactttcatatcagccacagaaacggaagtatccgtggaggtacaagattcacctgttgccgatgaagtttctggtgaatctc |
33418460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 33358424 - 33358284
Alignment:
| Q |
88 |
gaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgta |
187 |
Q |
| |
|
|||||||||||||| | |||||||||||| | |||||||||||||||||| |||||||| ||||||| |||||||||||| ||| | ||| || | |
|
|
| T |
33358424 |
gaggtgaagagttgtgagtatcgttgggttt-taaacaagacctacaagagttcaacttcacaatgatgaatcacgaaaatctcttaactgggaaatgca |
33358326 |
T |
|
| Q |
188 |
agattttggcaattgaagatgggacacaaccacaaccacaac |
229 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| |||| |
|
|
| T |
33358325 |
agattttggcaattgaagattagacgcaaccgcaaccgcaac |
33358284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 636 - 726
Target Start/End: Complemental strand, 33302979 - 33302889
Alignment:
| Q |
636 |
aaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagtttctactgaatctc |
726 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||| ||||||| | ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
33302979 |
aaatctcgaaccttcaaatcagccacagaaacggaagtatctgtggaggtacaagattcacctgttatcgatgaagtttctagtgaatctc |
33302889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 31563331 - 31563378
Alignment:
| Q |
90 |
ggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaaga |
137 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
31563331 |
ggtgaagagttgcggatatcgttgggtatgtaaacatgacctacaaga |
31563378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 31563390 - 31563444
Alignment:
| Q |
169 |
tccttggatccgaagtgtaagattttggcaattgaagatgggacacaaccacaac |
223 |
Q |
| |
|
||||||| || |||||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
31563390 |
tccttggctcggaagtgaaagaatttggcaattgaagatgagacacaaccacaac |
31563444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 749 - 799
Target Start/End: Complemental strand, 33261511 - 33261461
Alignment:
| Q |
749 |
tccatatcatttgtcgattcattggtcggttcctcaacaacttttgccaac |
799 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
33261511 |
tccatatcattggtcaattcattggtcggttcctcagcaactgttgccaac |
33261461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 33358135 - 33358066
Alignment:
| Q |
417 |
tgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcgg |
486 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | || ||| || |||| ||||||||||||||||||||| |
|
|
| T |
33358135 |
tgattttgttggcagaagtgcgacttactttttctgctttgcattttagactgaattttataatttgcgg |
33358066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 53 - 799
Target Start/End: Original strand, 17441368 - 17442049
Alignment:
| Q |
53 |
gttttgacatttttaaggggcaggctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaat |
152 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
17441368 |
gttttgaaatttttgaggggcaagctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaat |
17441467 |
T |
|
| Q |
153 |
gataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaagatgggacacaaccacaaccacaacaagaatcattcatgtcacaagtc |
252 |
Q |
| |
|
||| ||||||||||| |||||| || |||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
17441468 |
gatgaatcacgaaaaaaccttggctcagaagtgcaagattttggcaattgaagatgaga------cacaaccagaacaagaatcattcatctcacaagtc |
17441561 |
T |
|
| Q |
253 |
ataactagtacaccgagaagaaacaacagatggatcacaaaaaattcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagc |
352 |
Q |
| |
|
||||||| | ||| ||||| ||| ||||||||||||||||| | ||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
17441562 |
ataactacttcacaaagaag---------------------aaagtcaacaagtgataacaaatcaactgcaacaacaatctctgttgtcaacaacaagc |
17441640 |
T |
|
| Q |
353 |
agaggtactgaagataattcaaaagaatcttgctaactttatatcattcatannnnnnnnnccttgattttgttggcagaagtgagactatgtttgtttg |
452 |
Q |
| |
|
| |||||| ||||||||||||||| ||||||| ||||||| || |||||||||||||| |||||||||| ||||||| || |
|
|
| T |
17441641 |
aaaggtacggaagataattcaaaaaaatcttgttaacttt--------------------tccatgattttgttggcacaagtgagactttgtttgtctg |
17441720 |
T |
|
| Q |
453 |
attttcaatttatactgaattttataatttgcggtgtggatgtgccgtttggtgggggttttaaatttgtgttaggttgtaa-tctccgtgtcgttttcg |
551 |
Q |
| |
|
|||| || |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | | | | ||||| || |
|
|
| T |
17441721 |
atttgcattttagactgaattttataatttgcgg----------------ggtgggggttttaaatttgtgtttggttgtaattttgcatcccgtttccg |
17441804 |
T |
|
| Q |
552 |
atttctgtgtctgtgtttcatagacaacaacaattttaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctcca |
651 |
Q |
| |
|
| || ||| | ||||||||||||||||| | ||| |||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||| |
|
|
| T |
17441805 |
gtgtc--tgtttatgtttcatagacaacaatattttaaggaacactttatcactgaaatttgcatccatgtcatccacagaaaaaaatctcgaaccgcca |
17441902 |
T |
|
| Q |
652 |
tatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagtttctactgaatctcaacagnnnnnnnntctcaaacctcc |
751 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
17441903 |
tatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttacagatgaagtttctactgaatctccacag-aaaaaaatcttgaacctcc |
17442001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 17446954 - 17447048
Alignment:
| Q |
112 |
tgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatccgaagtgtaagattttggcaattgaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||| | ||| ||||||||||||||| || |||||| |||||||| | ||||||||| |
|
|
| T |
17446954 |
tgggtatgtaaacaagacctacaagagttcaacttaacaatgttgaataacgaaaattccttggctcagaagtgcaagatttttgaaattgaaga |
17447048 |
T |
|
Back To:
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Target: scaffold0428 (Bit Score: 153; Significance: 1e-80; HSPs: 6)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 558 - 799
Target Start/End: Complemental strand, 5490 - 5250
Alignment:
| Q |
558 |
gtgtctgtgtttcatagacaacaacaattttaggaacactttatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctccatatcag |
657 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5490 |
gtgtctgtgtttcatagacaacaacattttaaggaacactatatcactgaaatctgcattcatgtcatccacagaaataaatctcgaacctccatatcag |
5391 |
T |
|
| Q |
658 |
ccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagtttctactgaatctcaacagnnnnnnnntctcaaacctccatatca |
757 |
Q |
| |
|
||||||||| |||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
5390 |
ccacagaaactgaagtatccgcggaggcaccgaattcacctgttgcaaatgaagtttctactgaatctcaacag-aaaaaaatctcgaacctccatatca |
5292 |
T |
|
| Q |
758 |
tttgtcgattcattggtcggttcctcaacaacttttgccaac |
799 |
Q |
| |
|
|| ||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
5291 |
ttggtcaattcattggtcggttcctcagcaactgttgccaac |
5250 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 80 - 372
Target Start/End: Complemental strand, 5892 - 5615
Alignment:
| Q |
80 |
tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc |
179 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||| ||||| ||||| ||||||| | | |
|
|
| T |
5892 |
tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttc |
5793 |
T |
|
| Q |
180 |
gaagtgtaagattttggcaattgaagatgggacacaaccacaaccac------aacaagaatcattcatgtcacaagtcataactagtacaccgagaaga |
273 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||| |||||| |
|
|
| T |
5792 |
gaaatgtaagattttggcaattgaagatgagacacaaccacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaag- |
5694 |
T |
|
| Q |
274 |
aacaacagatggatcacaaaaaattcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattc |
372 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5693 |
--------------------aaagtcaacaagtgataacaagtcaaacgcaaaaacaatctctgttttcaaccgcaagcagaggtactgaagataattc |
5615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 298 - 396
Target Start/End: Original strand, 12010 - 12108
Alignment:
| Q |
298 |
tcaacaagtgataacaagttaaccgcaaaaacaatctctgttgtcaaccgcaagcagaggtactgaagataattcaaaagaatcttgctaactttatat |
396 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
12010 |
tcaacaagtgctaacaagtcaaccgcaaaaacaatctctgttgtcaactgcaagcagaggtactgaagataattcaaaagaattttgttaactttatat |
12108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 13018 - 13161
Alignment:
| Q |
80 |
tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc |
179 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||| |||| ||| |||| || ||||| ||| |||||||| || |
|
|
| T |
13018 |
tgggtacggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctca |
13117 |
T |
|
| Q |
180 |
gaagtgtaagattttggcaattgaagatgggacacaaccacaac |
223 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
13118 |
gaagtgcaagattttggaaattgaagatgggacacaaccgcaac |
13161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 504 - 649
Target Start/End: Original strand, 12143 - 12279
Alignment:
| Q |
504 |
gtgggggttttaaatttgtgttaggttgtaatctccgtgtcgttttcgatttctg-tgtctgtgtttcatagacaacaacaattttaggaacactttatc |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | || |||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
12143 |
gtgggggttttaaatttgtgttaggttgtaatttccgtgctg----cg---tctggtgtctgtgtttcatagacaacat---tttaaggaacactttatc |
12232 |
T |
|
| Q |
603 |
actgaaatctgcattcatgtcatccacagaaataaatctcgaacctc |
649 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
12233 |
acggaaatctgcattcatgtcatccacaagaaaaaatctcaaacctc |
12279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 5607 - 5538
Alignment:
| Q |
417 |
tgattttgttggcagaagtgagactatgtttgtttgattttcaatttatactgaattttataatttgcgg |
486 |
Q |
| |
|
||||||||||||||||||| | ||| | ||||| ||| || || |||| ||||||||||||||||| ||| |
|
|
| T |
5607 |
tgattttgttggcagaagtcacactttctttgtctgacttgcattttagactgaattttataatttacgg |
5538 |
T |
|
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Target: scaffold1408 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 146 - 1
Alignment:
| Q |
80 |
tgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggatcc |
179 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||| ||||| ||||| ||||||| | | |
|
|
| T |
146 |
tgggtatggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttc |
47 |
T |
|
| Q |
180 |
gaagtgtaagattttggcaattgaagatgggacacaaccacaacca |
225 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46 |
gaaatgtaagattttggcaattgaagatgagacacaaccacaacca |
1 |
T |
|
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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 31479558 - 31479640
Alignment:
| Q |
91 |
gtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattcctt |
173 |
Q |
| |
|
||||||| ||| ||||| |||||||| | |||||| || |||||||||||||||||| ||| ||| |||||| ||||||||| |
|
|
| T |
31479558 |
gtgaagaattgtgggtaccgttgggtttataaacaggatctacaagaattcaacttaacaaagatgaatcacagaaattcctt |
31479640 |
T |
|
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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 31485293 - 31485354
Alignment:
| Q |
86 |
tggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaactta |
147 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| || || || ||||| ||||||||| |
|
|
| T |
31485293 |
tggaagtgaagagttgcgggtatcgttgggtatttaagcaggatctgcaagagttcaactta |
31485354 |
T |
|
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