View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467-Insertion-4 (Length: 662)
Name: NF2467-Insertion-4
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467-Insertion-4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 38 - 662
Target Start/End: Complemental strand, 44872765 - 44872143
Alignment:
| Q |
38 |
ttacaaaatcatcacaatctttatctctctcgtgagaatataattttcaacnnnnnnnnnnnnn----gtctgttgaagaacattagggcatcacacatc |
133 |
Q |
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| T |
44872765 |
ttacaaaatcatcacaatctttatctctctcgtgagaatataattttcaactatatatatatatatatgtctgttgaagaacattagggcaccacacatc |
44872666 |
T |
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| Q |
134 |
aaaaataataataacattgaaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacat |
233 |
Q |
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| T |
44872665 |
aaaaataa------cattgaaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacat |
44872572 |
T |
|
| Q |
234 |
agaacctgagtattgtccacaagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaa |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44872571 |
agaacctgagtattgtccacaagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaa |
44872472 |
T |
|
| Q |
334 |
gcaaaacaacatcttttttatttgggttggaggttttggtatattgacaaaaagtgtaggtgggaattgcgttatacttctcctaatgccaaaaactata |
433 |
Q |
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| T |
44872471 |
gcaaaacaacatcttttttatttgggttggaggttttggtatattgacaaaaagtgtaggtgggaattgcgttatacttctcctaatgccaaaaactata |
44872372 |
T |
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| Q |
434 |
ctactcttagaaaagcctgccatgtttgcattgaacaaggagggtgttccctcaaacactcttcaactgcagcaccaatttcttcgtctccattagagtt |
533 |
Q |
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| T |
44872371 |
ctactcttagaaaagcctgccatgtttgcattgaacaaggagggtgttccctcaaacactcttcaaccgcagcaccaatttcttcgtctccattagagtt |
44872272 |
T |
|
| Q |
534 |
gaaaaagctatcgagagaatcccatcaaacagcagcagcaacaattttttgctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagta |
633 |
Q |
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| T |
44872271 |
gaaaaagcgatcgagagaatcccatgaaacagcagcagcaacaattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagta |
44872172 |
T |
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| Q |
634 |
acaagagcatttactttgtctgcattaca |
662 |
Q |
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| T |
44872171 |
gcaagagcatttactttgtctgcattaca |
44872143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 590 - 662
Target Start/End: Complemental strand, 44872014 - 44871942
Alignment:
| Q |
590 |
cattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgtctgcattaca |
662 |
Q |
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| T |
44872014 |
cattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattaca |
44871942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 153 - 510
Target Start/End: Original strand, 47527011 - 47527371
Alignment:
| Q |
153 |
aaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctgagtattgtcca |
252 |
Q |
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|||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |
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| T |
47527011 |
aaattgtgtttttgtgcagattggtatatgaattgaagtttttgatatggattctcgttcactacctcctgatatcaacatagtacctgagcattgtcca |
47527110 |
T |
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| Q |
253 |
caagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaacatctttttt |
352 |
Q |
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| T |
47527111 |
gaagctgtaagagaatggtaccgcttaacaggactacatgatcctaaagaaagtgctggtagaaaggatttgactttgaaagcaaaacaacatcttcttt |
47527210 |
T |
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| Q |
353 |
atttgggttggaggttttggtatattgacaaaaagtgtaggtgggaattgcgttatacttctcct---aatgccaaaaactatactactcttagaaaagc |
449 |
Q |
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| T |
47527211 |
ctttgggttggaagttatggtacattgacaaaaatggtaagcgggaattgcgttatacttctcctaacaatgggaaaaaccatattactcttaaaaaagc |
47527310 |
T |
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| Q |
450 |
ctgccatgtttgcattgaacaaggagggtgttccctcaaacactcttcaactgcagcacca |
510 |
Q |
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| T |
47527311 |
ctgcaagagttgcattgaagaaggagggtgttccctcaaacacccttcaactccagcacca |
47527371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 166 - 580
Target Start/End: Original strand, 47521775 - 47522198
Alignment:
| Q |
166 |
gtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctgagtattgtccacaagctgtgtttg |
265 |
Q |
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||||||||| ||||| |||||| |||||||||||| |||||||||| ||||||| ||||||||||| |||||||| |||||||| ||||||| | |
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| T |
47521775 |
gtgcagatttgtatatgatttggattttttgatatggcttctcgttcagtacctcctgatatcaacataaaacctgagcattgtccagaagctgtaagag |
47521874 |
T |
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| Q |
266 |
aatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaacatcttttttatttgggttggag |
365 |
Q |
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| T |
47521875 |
aatggtaccgcttaacaggactacaagatcgtaaagaaagtgctggtagaaagaatttggctttgaaagcaaaacaacatcttctttctttgggttggaa |
47521974 |
T |
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| Q |
366 |
gttttggtatattgacaaaaagtgtaggtgggaattgcgttatacttctcct---aatgccaaaaactatactactcttagaaaagcctgccatgtttgc |
462 |
Q |
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| T |
47521975 |
gttttggtacattgacaaaaattgcaagtgggaattgcgttatacttctcctaacaatgggaaaaaccatattactcttagaaaagcctgtgagagttgc |
47522074 |
T |
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| Q |
463 |
attgaacaaggagggtgttccctcaaacactcttcaactgcagca------ccaatttcttcgtctccattagagttgaaaaagctatcgagagaatccc |
556 |
Q |
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| T |
47522075 |
attgaagaaggagggtgttcccccgaacgcccttcaactgcagcaataacgtcaatttcttcgcctccactacagttgaaaaagagatcgagagaatccg |
47522174 |
T |
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| Q |
557 |
atcaaacagcagcagcaacaattt |
580 |
Q |
| |
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| T |
47522175 |
aggaaacagaaggaacaacaattt |
47522198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 47527856 - 47527901
Alignment:
| Q |
509 |
caatttcttcgtctccattagagttgaaaaagctatcgagagaatc |
554 |
Q |
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| T |
47527856 |
caatttcttcgtctccattacagttgaaagagcaaccgagagaatc |
47527901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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