View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467-Insertion-5 (Length: 432)
Name: NF2467-Insertion-5
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 432
Target Start/End: Original strand, 33152694 - 33153133
Alignment:
| Q |
8 |
attaactgttaatagaaaattgaatttatatggaattggcttctcatacaattgatgcaaaagttctctctatttgttatgaaaaaattggcatcttggc |
107 |
Q |
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| T |
33152694 |
attaactgttaatagaaaattgaatttatatggaattggcttctcatacaattgatgcaaaagttctccctatttgttatgaaaaaattggcatcttggc |
33152793 |
T |
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| Q |
108 |
taatgcttggaaagtgaaatagacttcaaatttgcatctctcttttgtctttatatgtgaatgttctaaaccaagtgatcatcgatttcaagttacaaat |
207 |
Q |
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| T |
33152794 |
tgatgcttggaaagtgaaatagacttcaaatttgcatctctcttttgtctttatatgtgaatgttctaaaccaagtgatcatcgatttcaagttataaat |
33152893 |
T |
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| Q |
208 |
atgcttcagttaaggacccatc----------------gttcaagtcatgactggaacaatcgtaggccaaactttggttatcttccaaccgaactccga |
291 |
Q |
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| T |
33152894 |
aagcttcagttaaggacccatcgttcgggatattcggagttcgagtcatgactggaacaatcgtaggccaaactttggttatcttccaaccgaactccga |
33152993 |
T |
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| Q |
292 |
actaccacggtctctatcccttaagaattggagggttaagacnnnnnnnnnnntgtatatgttctannnnnnnaaatggtttgaggtgttgtgttctcct |
391 |
Q |
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| T |
33152994 |
attaccacggtctctatcccttaagaattggagggttaagac-aaaaaaaatatgtatatgttctatttttttaaatggtttgaggtgttgtgttctcct |
33153092 |
T |
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| Q |
392 |
ccctatttactttgacgtgaaactttattgcaacttgcaga |
432 |
Q |
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| T |
33153093 |
ccctatttactttgaagtgaaactttattgcaacttgcaga |
33153133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 39126052 - 39126138
Alignment:
| Q |
79 |
atttgttatgaaaaaattggcatcttggctaatgcttggaaagtgaaatagacttcaaatttg--catctctcttttgtctttatat |
163 |
Q |
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| T |
39126052 |
atttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaacttcaaatttgtatatctctctttagtctttatat |
39126138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 39503735 - 39503675
Alignment:
| Q |
79 |
atttgttatgaaaaaattggcatcttggctaatgcttggaaagtgaaatagacttcaaatt |
139 |
Q |
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| T |
39503735 |
atttgttaagagaaatttggtatcttggctaatgcttggaaaatgaaatagactttaaatt |
39503675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 2363202 - 2363261
Alignment:
| Q |
79 |
atttgttatgaaaaaattggcatcttggctaatgcttggaaagtgaaatagacttcaaattt |
140 |
Q |
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| T |
2363202 |
atttgttatagaaaagttggcatattggctaatgcttggaaaatgaa--agacttcaaattt |
2363261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 39139804 - 39139876
Alignment:
| Q |
79 |
atttgttatgaaaaaattggcatcttggc--taatgcttggaaagtgaaatagacttcaaatttgcatctctctt |
151 |
Q |
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| T |
39139804 |
atttgttaagagaaaattgacatcttggtgttaatgcgtggaaaatgaaatagacttcaaatt--catctctctt |
39139876 |
T |
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