View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2467-Insertion-6 (Length: 238)

Name: NF2467-Insertion-6
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2467-Insertion-6
NF2467-Insertion-6
[»] chr3 (12 HSPs)
chr3 (7-238)||(3753769-3754000)
chr3 (19-189)||(4142822-4142992)
chr3 (19-188)||(4158633-4158802)
chr3 (22-140)||(3745168-3745286)
chr3 (14-119)||(967861-967966)
chr3 (14-134)||(2679178-2679298)
chr3 (22-144)||(2651142-2651264)
chr3 (38-126)||(803972-804060)
chr3 (45-119)||(1003714-1003788)
chr3 (45-119)||(1021711-1021785)
chr3 (16-134)||(2687085-2687203)
chr3 (77-153)||(1891770-1891846)
[»] chr5 (1 HSPs)
chr5 (38-190)||(11081395-11081547)
[»] chr8 (1 HSPs)
chr8 (13-146)||(19727108-19727241)
[»] chr1 (1 HSPs)
chr1 (46-122)||(25611754-25611830)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 3753769 - 3754000
Alignment:
Q  7 aaccattcacttccaactcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcat 106  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753769 aaccattcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcat 3753868  T
Q  107 ggaattttctaatatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactacagccgttggtcacacaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3753869 ggaattttctaatatccgatccaaaattcgtcaagaaacaactcagtgtgtccatcgcttggaacctccacttcctaaactacagccgttggtcacacaa 3753968  T
Q  207 gtatattctcacatcttatccaatcgactcta 238  Q
    ||||||||||||||||||||||||||||||||    
T  3753969 gtatattctcacatcttatccaatcgactcta 3754000  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 4142992 - 4142822
Alignment:
Q  19 ccaactcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaa 118  Q
    ||||||||||| | ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4142992 ccaactcttccttccgacgtcattccagaaatcatatgtaggctaccagtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaa 4142893  T
Q  119 tatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactac 189  Q
    |||| ||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||| |||||||    
T  4142892 tatctgatcccaaattcgtcaagaagcaactctgtgtgtccaccactcggaacctccacttccgaaactac 4142822  T

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Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 4158802 - 4158633
Alignment:
Q  19 ccaactcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaa 118  Q
    ||||||||||| | ||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  4158802 ccaactcttccttccgacgtcattctagaaatcatatgtaggctaccggtaaagttcatcctccgattccaatgtgtttgcaagtcatggaattctctaa 4158703  T
Q  119 tatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaacta 188  Q
    |||| ||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||    
T  4158702 tatctgatcccaaattcgtcaagaagcaactctgtgtgtccaccactcggaacctccacttcctaaacta 4158633  T

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Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 3745168 - 3745286
Alignment:
Q  22 actcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 121  Q
    |||||||| | ||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  3745168 actcttccttccgacgtcattccagaaatcttatgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaatat 3745267  T
Q  122 ccgatccaaaattcgtcaa 140  Q
    | ||||| ||||| |||||    
T  3745268 ctgatcccaaatttgtcaa 3745286  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 967861 - 967966
Alignment:
Q  14 cacttccaactcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattt 113  Q
    ||||||| |||||||| | |||  ||||||||||||| ||||||||| || |||||||| || || | | |||||||||||| |||||||| |||||||     
T  967861 cacttccgactcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattc 967960  T
Q  114 tctaat 119  Q
    ||||||    
T  967961 tctaat 967966  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 2679298 - 2679178
Alignment:
Q  14 cacttccaactcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattt 113  Q
    ||||||| |||||||| | |||| |||| ||||| || || | |||||||| ||| || ||| |||||| | |||||||||| |||||||||||||| |     
T  2679298 cacttcccactcttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatc 2679199  T
Q  114 tctaatatccgatccaaaatt 134  Q
    ||| || ||||||||||||||    
T  2679198 tctgatctccgatccaaaatt 2679178  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 2651264 - 2651142
Alignment:
Q  22 actcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 121  Q
    |||||||| | |||| | |||| |||||| ||| ||||||||||||||||| || || ||| | | |||||||| |||||| ||||||||| ||| || |    
T  2651264 actcttcctttcgaccttattcaagaaattctacgtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattctcttatct 2651165  T
Q  122 ccgatccaaaattcgtcaagaaa 144  Q
    ||||||  |||||| ||| ||||    
T  2651164 ccgatcacaaattcatcatgaaa 2651142  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 804060 - 803972
Alignment:
Q  38 tcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgat 126  Q
    ||||| |||||||  | ||| ||||||| || |||||| | |||| | ||||||| ||||||||||||||||||| |||||||| ||||    
T  804060 tcattgcagaaattttgtgttggttacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctctaatatgcgat 803972  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 1003714 - 1003788
Alignment:
Q  45 agaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 119  Q
    ||||||||||  ||||||||| || ||| || |||||| | | ||||| | ||||||||||||||||||||||||    
T  1003714 agaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaat 1003788  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 1021711 - 1021785
Alignment:
Q  45 agaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 119  Q
    ||||||||||  ||||||||| || ||| || |||||| | | ||||| | ||||||||||||||||||||||||    
T  1021711 agaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaat 1021785  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 2687203 - 2687085
Alignment:
Q  16 cttccaactcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttc 115  Q
    ||||| || ||||| | |||| |||| ||||| || || | |||||| | ||| || ||| |||||| | |||||||||| |||||||||||||| | ||    
T  2687203 cttcccacccttcctttcgacctcatcccagatatactgtctaggttgcaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc 2687104  T
Q  116 taatatccgatccaaaatt 134  Q
    | || ||||||||||||||    
T  2687103 tgatctccgatccaaaatt 2687085  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 1891846 - 1891770
Alignment:
Q  77 tccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactccgt 153  Q
    |||||| | |||||| ||| |||||||||||||||| |||||| |||||| | || |||| || |||||| ||||||    
T  1891846 tccttcaactccgatctgtctgcaagtcatggaattctctaatctccgattccaagttcgccatgaaacacctccgt 1891770  T

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Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 11081395 - 11081547
Alignment:
Q  38 tcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgt 137  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||| | ||||||| ||||| ||||||||    
T  11081395 tcattctagaaatcctatgtaggttaccggttaagttcatccttcgattccaatgtgtttgcaagtcgtgaaattctttaatatctgatcccaaattcgt 11081494  T
Q  138 caagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactaca 190  Q
    ||||||||||||||||||||||  | |||| ||||||||||||||||||||||    
T  11081495 caagaaacaactccgtgtgtccgccactcgaaacctccacttcctaaactaca 11081547  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 19727108 - 19727241
Alignment:
Q  13 tcacttccaactcttccctacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaatt 112  Q
    |||||||| |||||||| | |||  ||||||||||||| ||| ||||| |||| || || ||| || | |  |||||||||||||||||||| | |||||    
T  19727108 tcacttcctactcttcctttcgatctcattccagaaattctaagtaggctacccgtgaaattcctcttgcagttccgatgtgtttgcaagtcgttgaatt 19727207  T
Q  113 ttctaatatccgatccaaaattcgtcaagaaaca 146  Q
     |||||| || ||||  ||||||| ||| |||||    
T  19727208 ctctaatctctgatcacaaattcgccaacaaaca 19727241  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 25611830 - 25611754
Alignment:
Q  46 gaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatc 122  Q
    |||||||| |||||| | ||||| |||||| |||||| |||| | || || |||||||||||||||| |||||||||    
T  25611830 gaaatcctttgtaggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctctaatatc 25611754  T

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