View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467R-Insertion-4 (Length: 553)
Name: NF2467R-Insertion-4
Description: NF2467R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467R-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 23018745 - 23019155
Alignment:
| Q |
9 |
aaaagatatgacaagtagaggactagtagagccatggtaaagaaagatagtattatgtattatgtgctaccattttgtggtttatatacatatgatatga |
108 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23018745 |
aaaagatatgacaagtagagggctagtagagccatggaaaagaaagatagtattatgtattatgtgctactattttgtggtttatatacatatgatatga |
23018844 |
T |
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| Q |
109 |
tatacaatcgagacattattgatatagttaaaaatatagagttgaatctgagatacttatacaaatccaatggttccctcgtggtcaataaaaaatgctg |
208 |
Q |
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| T |
23018845 |
tatacaatcgagacattattgatatagttaaaaatatagagttgaatctgagatacttatacaaatccaatggttccctcgtggtcaataaaaaatgctg |
23018944 |
T |
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| Q |
209 |
ttatgtccttttccatggaaagtaaacgagagggacattttggaagcataatacgtgtaaaaaattacaaaacgaaaaagttatttaattagaacgtata |
308 |
Q |
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| T |
23018945 |
ttatgtccttttccatggaaagtaaacgagaggaacattttggaagcataatacgtgtcaaaaattacaaaacaaaaaagttatttaattagaacgtata |
23019044 |
T |
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| Q |
309 |
cactgaagttactaattcagaataatgctagcaactagcactactctattacttcaacataaaacatatatgaacctcttatcaaatctcaacaaggaga |
408 |
Q |
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| T |
23019045 |
cactgaagttactaattcagaataatgctagcaactagcactactctattacttcaacataaaacatatatgaaccccttatcaaatctcaacaaggaga |
23019144 |
T |
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| Q |
409 |
gaataagaata |
419 |
Q |
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| T |
23019145 |
gaataagaata |
23019155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 23141759 - 23141833
Alignment:
| Q |
9 |
aaaagatatgacaagtagaggactagtagagccatggtaaagaaaga---tagtattatgtattatgtgctacca |
80 |
Q |
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| T |
23141759 |
aaaatatatgacaagtagatgactagtagagccatggaaaagaaagaaagttgtattatgtgtcatgtgctacca |
23141833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 23025759 - 23025805
Alignment:
| Q |
9 |
aaaagatatgacaagtagaggactagtagagccatggtaaagaaaga |
55 |
Q |
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|||| ||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
23025759 |
aaaatatatgacaagtagaggactagtaaagccatggaaaagaaaga |
23025805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 23147405 - 23147441
Alignment:
| Q |
9 |
aaaagatatgacaagtagaggactagtagagccatgg |
45 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |
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| T |
23147405 |
aaaatatatggcaagtagaggactagtagagccatgg |
23147441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 1674117 - 1674253
Alignment:
| Q |
418 |
taatagagtatattgtaaagtcta-atatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagttagttacgg |
516 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |
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| T |
1674117 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtgacaagtttgttactg |
1674216 |
T |
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| Q |
517 |
attcatttcattctttgctatactatataaggctagc |
553 |
Q |
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| T |
1674217 |
attcatttcattccttgctatactatataaggctagc |
1674253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 1678694 - 1678830
Alignment:
| Q |
418 |
taatagagtatattgtaaagtcta-atatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagttagttacgg |
516 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | |
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| T |
1678694 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaattgtgctgatgtggcaagtttgttactg |
1678793 |
T |
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| Q |
517 |
attcatttcattctttgctatactatataaggctagc |
553 |
Q |
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| T |
1678794 |
attcatttcattccttgctatactatataaggctagc |
1678830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 45493358 - 45493493
Alignment:
| Q |
418 |
taatagagtatattgtaaagtcta-atatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagttagttacgg |
516 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
45493358 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagtttgttactg |
45493457 |
T |
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| Q |
517 |
attcatttcattctttgctatactatataaggctagc |
553 |
Q |
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| T |
45493458 |
attcatttcattc-ctgctatactatataaggctagc |
45493493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 45497921 - 45498056
Alignment:
| Q |
418 |
taatagagtatattgtaaagtcta-atatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagttagttacgg |
516 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
45497921 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagtttgttactg |
45498020 |
T |
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| Q |
517 |
attcatttcattctttgctatactatataaggctagc |
553 |
Q |
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| T |
45498021 |
attcatttcattc-ctgctatactatataaggctagc |
45498056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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