View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467R-Insertion-5 (Length: 500)
Name: NF2467R-Insertion-5
Description: NF2467R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467R-Insertion-5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 22704152 - 22703661
Alignment:
| Q |
9 |
gaaactagttactaaacttggttagattgtataactagttaccaaagttggttagattataaaatgacttttacaagtactttaagatatcatgagatat |
108 |
Q |
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| T |
22704152 |
gaaactagttactaaacttggttagattgtataactagttaccaaagttggttagattataaaatgacttttacaagtactttaagatatcatgagatat |
22704053 |
T |
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| Q |
109 |
aagtgttatcttcaagatatttcacgagtaataaaatgattattcttaatgtggttttttctatttccatgttagaatgtgaggttttaataccatattc |
208 |
Q |
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| T |
22704052 |
aagtgttatcttcaagatatttcacgagtaataaaatgattattcttaatgtggttttttctatttccatgttagaatgtgaggttttaataccatattc |
22703953 |
T |
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| Q |
209 |
cgcacatctattgagaatctgagaaatacgtactgttttttaagcatattgtagtcactacttcaccatttcatgtatgaccctgcagcgtgtgttctgc |
308 |
Q |
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| T |
22703952 |
cgcacatctattgagaatctgagaaatacgtactgttttttaagcatattgtagtcactacttcaccatttcatgtatggccctgcagcgtgtgttctgc |
22703853 |
T |
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| Q |
309 |
agtattagttataattttaaggtcattcaaatttgtgaaaatataatattttaaatgaatattgtgtgttttagaagattttcaataaggagtggtgccc |
408 |
Q |
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| T |
22703852 |
agtattagttataattttaaggtcattcaaatttgtgaaaatataatattttaaatgaatattgtgtgttttagaagattttcaataaggagtggtgccc |
22703753 |
T |
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| Q |
409 |
taataccgccgtttcaattccatctttatcggttgagtaatcataaactttcctagcttgtttctgcaccaccgtttctaaactaaaacctt |
500 |
Q |
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| T |
22703752 |
taataccgccgtttcaattccatctttatcggttgagtaatcataaactttcctagcttgtttctgcaccaccgtttctaaacaaaaacctt |
22703661 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 456
Target Start/End: Complemental strand, 54221382 - 54221327
Alignment:
| Q |
400 |
gtggtgccctaataccgccgtttcaattccatctttatcggttgagtaatcataaac |
456 |
Q |
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| T |
54221382 |
gtggtgccctaataccgccgtttcaaatgcat-tttatcagttgagttatcataaac |
54221327 |
T |
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