View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2467_high_4 (Length: 336)

Name: NF2467_high_4
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2467_high_4
NF2467_high_4
[»] chr2 (1 HSPs)
chr2 (30-327)||(5553624-5553922)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 327
Target Start/End: Complemental strand, 5553922 - 5553624
Alignment:
Q  30 atatatattactcttagcactcatctgctatcatcataatcatcattatcataaccatatactaggaagcaaattacaggtctttcatacttctctcaag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5553922 atatatattactcttagcactcatctgctatcatcataatcatcattatcataaccatatactaggaagcaaattacaggtctttcatacttctctcaag 5553823  T
Q  130 cacaaatatatcaactgcacaagaa-aaaattaaaacctagttagtaggaagaagtagaatataaatatataaacatgttaatagtctaacaaaattttg 228  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  5553822 cacaaatatatcaactgcacaagaaaaaaattaaaacctagttagtaggaagaagtagaatataaatatataatcatgttaatagtctaataaaattttg 5553723  T
Q  229 agctacnnnnnnncataaataaattggaatcttctttccaaaaatcaatttttgtttctaaataccgaaccttttcgaaatttctcggtccatattatt 327  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  5553722 agctacaaaaaaacataaataaattggaatcttctttccaaaaatcaatttttgtttctaaataccaaaccttttcaaaatttctcggtccattttatt 5553624  T

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