View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467_high_7 (Length: 251)
Name: NF2467_high_7
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 48968142 - 48968363
Alignment:
| Q |
30 |
tatgtttggttttgtgatgacaagaactgattttgaataaattgattatgtataaaagtgagtgaaaagttgattgatgtttgtttgaatatatttttgt |
129 |
Q |
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| T |
48968142 |
tatgtttggttttgtgatgacaagaactgattttgaataaattgattatgtataaaagtgagttaaaagttgattgatgtttgtttgaatatatttttgt |
48968241 |
T |
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| Q |
130 |
aaaattgatttgaacaataaatctaaatcaattataaaatcaaaagatataatttatagcttttaagtagaatcaattctacatacaaaattatttctgc |
229 |
Q |
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| T |
48968242 |
aaaactgatttgaacaataaatttaaatcaattataaaatcaaaagatataatttatagcttttaagtagaatcaattatacatacaaaattatttctgc |
48968341 |
T |
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| Q |
230 |
acaaaaacaatcaaatatgtca |
251 |
Q |
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| T |
48968342 |
acaaaaacaatcaaatatgtca |
48968363 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 24364083 - 24364132
Alignment:
| Q |
32 |
tgtttggttttgtgatgacaagaactgattttgaataaattgattatgta |
81 |
Q |
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| T |
24364083 |
tgtttggttttatgatgacaaaaattgattttgaatgaattgattatgta |
24364132 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 44670787 - 44670834
Alignment:
| Q |
29 |
atatgtttggttttgtgatgacaagaactgattttgaataaattgatt |
76 |
Q |
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| T |
44670787 |
atatgtttggttctgtgctgacaagaattgattttgaattaattgatt |
44670834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 42741139 - 42741091
Alignment:
| Q |
30 |
tatgtttggttttgtgatgacaagaactgattttgaataaattgattat |
78 |
Q |
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| T |
42741139 |
tatgtttgattttggggtgacaagaattgattttgagtaaattgattat |
42741091 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 32888941 - 32888987
Alignment:
| Q |
111 |
tgtttgaatatatttttgtaaaattgatttgaacaataaatctaaat |
157 |
Q |
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| T |
32888941 |
tgtttgaatatatttatgtaaaagtgagttgaacaataaatttaaat |
32888987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 34800745 - 34800781
Alignment:
| Q |
57 |
tgattttgaataaattgattatgtataaaagtgagtg |
93 |
Q |
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| T |
34800745 |
tgattttgaatgaattgattatgcataaaagtgagtg |
34800781 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 40848067 - 40848030
Alignment:
| Q |
154 |
aaatcaattataaaatcaaaagatataatttatagctt |
191 |
Q |
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| T |
40848067 |
aaatcaattctaaaatcaaaagatataaattatagctt |
40848030 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 9952555 - 9952600
Alignment:
| Q |
47 |
tgacaagaactgattttgaataaattgattatgtataaaagtgagt |
92 |
Q |
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| T |
9952555 |
tgacaaaaattgattttgaatgaattgattatggataaaagtgagt |
9952600 |
T |
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