View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467_low_13 (Length: 296)
Name: NF2467_low_13
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 1164249 - 1164061
Alignment:
| Q |
56 |
cacagagcctcaacatcttcgtcatcaggatactcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcc |
155 |
Q |
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| T |
1164249 |
cacagagcctcaacatcttcgtcatcaggatactcaacatcttcctcatcaggatactgaccctgacctattaacttctttatacactcatgcattatcc |
1164150 |
T |
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| Q |
156 |
tctctgacaacattttcttcttatatagttctccaatcaatctgatgtttcctaacatgcgcattctttccttggttcttctctgctcc |
244 |
Q |
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| T |
1164149 |
tctctgtcaacattttcttcttatatagttctccaatcaatctgatgtttcctaacatgcgcattctttccttggttcttctctgctcc |
1164061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 1814570 - 1814726
Alignment:
| Q |
88 |
ctcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttct |
187 |
Q |
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| T |
1814570 |
ctcaacatcttcctcatcaggatcctgacactgacctagtaacttctttatgcactcgtgcattatcctctctgtcaacattttcttcttataaagttct |
1814669 |
T |
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| Q |
188 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttggttcttctctgctcc |
244 |
Q |
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| T |
1814670 |
ccaatcaatctgatgtttcctaacatgcgccttcttgccttggttcttctctgctcc |
1814726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 1166138 - 1165982
Alignment:
| Q |
88 |
ctcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttct |
187 |
Q |
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| T |
1166138 |
ctcaacatctttctcatcaggatcctgacacagacctggtaacttctttatacactcatgaattatcctctctgtcaacattttcttcttatatagttct |
1166039 |
T |
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| Q |
188 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttggttcttctctgctcc |
244 |
Q |
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||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
1166038 |
ccaataaatctgatgtttcctgacatgcgccttcttgccttggttcttctctgctcc |
1165982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 17253951 - 17253839
Alignment:
| Q |
89 |
tcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttctc |
188 |
Q |
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|||| |||||| |||||||||| |||||||||||| || ||||| || || ||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
17253951 |
tcaatatcttcttcatcaggattctgacactgacccagtaactttttgatgcactcgtgcattatcctctctgtcagcattttcttcttatatagttctc |
17253852 |
T |
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| Q |
189 |
caatcaatctgat |
201 |
Q |
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|||| |||||||| |
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| T |
17253851 |
caattaatctgat |
17253839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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