View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467_low_1_N (Length: 638)
Name: NF2467_low_1_N
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467_low_1_N |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 105 - 631
Target Start/End: Complemental strand, 40541235 - 40540703
Alignment:
| Q |
105 |
aaaacaataaattttgaatagttactata--atgttgaaaatgaaatgtgcaaaaatatcaagcctctagtcaaaatgaacactaattaccaacaaaaag |
202 |
Q |
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| T |
40541235 |
aaaaaaataaattttgaatagttactatataatgttgaaaatgaaatgtgcaaaaatatcaagcctctagtcaaaatgaacactaattaccaacaaaaag |
40541136 |
T |
|
| Q |
203 |
aaaaatgaacactaattaaacattcagctgcttttgtttttcacatctatacacttctttaggatgatttttgttcatatatttgaacatatgtaaaagt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40541135 |
aaaaatgaacactaattaaacattcagctgcttttgtttttcacatctatacacttctttaggatgatttttgttcatatatttgaacatatgtaagagt |
40541036 |
T |
|
| Q |
303 |
ttttcatagcaaaatacacaaacaattataatttttatcaaatttgtgtagatatgttacaaaatataaatgtctctttnnnnnnnnttcaagtttcttc |
402 |
Q |
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| T |
40541035 |
ttttcatagcaaaatacacaaacaattataatttttatcaaatttgtgtagatatgttacaaaatataaacgtctctttaaaaaaaattcaagtttcttc |
40540936 |
T |
|
| Q |
403 |
tatgtgatttccttaaacagtcaatccttgattctctttgctacattattctgctttccacccaataatgaagcttcagcaagaagaaatgtaaaagaga |
502 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40540935 |
tatgtgattgccttaaacagtcaatccttgattctctttgctacattattctgctttccacccaataatgaagcttccgcaagaagaaatgtaaaagaga |
40540836 |
T |
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| Q |
503 |
aagttaaagagt----ttcttttttatcgaaatctatccccacttctcttccgtataagaccacnnnnnnnnnnnnnnnnnngataacaaggctttctag |
598 |
Q |
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|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40540835 |
aagttaaagagttttattttattttatcgaaatctatccccacttctcttccgtataagaccacaaaaagaaagaaaaaaaagataacaaggctttctag |
40540736 |
T |
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| Q |
599 |
agtcaagatcagtcaaaaaatgtattcttttct |
631 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40540735 |
agtcaagatcagtcaaaaaatgtattcttttct |
40540703 |
T |
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