View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467_low_4 (Length: 490)
Name: NF2467_low_4
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 38 - 483
Target Start/End: Original strand, 50240273 - 50240718
Alignment:
| Q |
38 |
atcgtatgcttgcatccatgtcacaaacttatggaccacttttcctactcaaacttggttccaaaaacttggttgttgtctctgatccaaaccttgccac |
137 |
Q |
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| T |
50240273 |
atcgtatgcttgcatccatgtcacaaacttatggaccacttttcctactcaaacttggttccaaaaacttggttgttgtctctgatccaaaccttgccac |
50240372 |
T |
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| Q |
138 |
acaagttcttcattcacaaggtgtcgagtttggttctcgtcctcgtaacgttgtctttgacatcttcactggtaatggacaagacatggttttcactgtc |
237 |
Q |
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| T |
50240373 |
acaagttcttcattcacaaggtgtcgagtttggttctcgtcctcgtaacgttgtctttgacatcttcactggtaatggacaagacatggttttcactgtc |
50240472 |
T |
|
| Q |
238 |
tatggtgatcattggcgcaaaatgcgaagaatcatgacattgccatttttcactaacaaagttgttcaaaattatagtaacatgtgggaacaagagatgg |
337 |
Q |
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| T |
50240473 |
tatggtgatcattggcgcaaaatgcgaagaatcatgacattgccatttttcactaacaaagttgttcaaaattatagtaacatgtgggaacaagagatgg |
50240572 |
T |
|
| Q |
338 |
atttggtaattcaagacctaaaggctaatgagattgttaaaagtgaaggcattgttatcagaaaacgtcttcagttgatgctgtataatatcatgtatag |
437 |
Q |
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| T |
50240573 |
atttggtagttcaagacctaaaggctaatgagattgttaaaagtgaaggcattgttatcagaaaacgtcttcagttgatgctgtataatatcatgtatag |
50240672 |
T |
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| Q |
438 |
gatgatgtttgatgccaaatttgagtctcaagaagatcctttgttt |
483 |
Q |
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| T |
50240673 |
gatgatgtttgatgccaaatttgagtctcaagaagatcctttgttt |
50240718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 306
Target Start/End: Complemental strand, 32083939 - 32083785
Alignment:
| Q |
152 |
cacaaggtgtcgagtttggttctcgtcctcgtaacgttgtctttgacatcttcactggtaatggacaagacatggttttcactgtctatggtgatcattg |
251 |
Q |
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|||||||||| || || || || ||| | |||||||| || || || |||||||||||||| |||||||||||||| ||||| ||||| || || ||||| |
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| T |
32083939 |
cacaaggtgttgaattcggatcacgtacacgtaacgtagttttcgatatcttcactggtaaaggacaagacatggtgttcacagtctacggcgaacattg |
32083840 |
T |
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| Q |
252 |
gcgcaaaatgcgaagaatcatgacattgccatttttcactaacaaagttgttcaa |
306 |
Q |
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| T |
32083839 |
gcgtaaaatgcgcagaatcatgacagttccgttttttacaaacaaggttgttcaa |
32083785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 450
Target Start/End: Complemental strand, 32083682 - 32083641
Alignment:
| Q |
409 |
cagttgatgctgtataatatcatgtataggatgatgtttgat |
450 |
Q |
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| T |
32083682 |
cagttgatgatgtataatattatgtataggattatgtttgat |
32083641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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