View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2467_low_5 (Length: 482)
Name: NF2467_low_5
Description: NF2467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2467_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 78 - 278
Target Start/End: Complemental strand, 42815711 - 42815512
Alignment:
| Q |
78 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
177 |
Q |
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| T |
42815711 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
42815612 |
T |
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| Q |
178 |
ttcttatcgttcttgaagaattttagatttattttcatcgttccggtggttcgatttattcgagcgtaacctagatagaaacaaaaaattagaaagaaag |
277 |
Q |
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| T |
42815611 |
ttcttatcgttcttgaagaattttagatttattttaatcgttctggtggttcgatttattcgatcgtaacctagatagaaa-aaaaaattagaaagaaag |
42815513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 82 - 278
Target Start/End: Complemental strand, 35064677 - 35064481
Alignment:
| Q |
82 |
ctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgtttct |
181 |
Q |
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| T |
35064677 |
ctgttgcttctcgtggtttctaattcggtagggtttcgcttcgctggatttggattccatttttgttgatgctctcaagatcattcaagactccgtttct |
35064578 |
T |
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| Q |
182 |
tatcgttcttgaagaattttagatttattttcatcgttccggtggttcgatttattcgagcgtaacctagatagaaacaaaaaattagaaagaaaga |
278 |
Q |
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| T |
35064577 |
tatcgttcttgaagaaatttagatttattttcattgttatggtggttcgatttattcgatcgtgacctagataggaaaaaaaaagtagagagaaaga |
35064481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 43025870 - 43025729
Alignment:
| Q |
78 |
gttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
177 |
Q |
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| T |
43025870 |
gttgctgttgctttacgcggtttcttgttcggtagggtttcgcttcgctggatttggattccattgttgttgatgctctcaagatcattcaagactccgt |
43025771 |
T |
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| Q |
178 |
tt----cttatcgttcttgaagaattttagatttattttcat |
215 |
Q |
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| T |
43025770 |
ttcttacttatcgttcttgaagagttttagatttattttcat |
43025729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 42815403 - 42815316
Alignment:
| Q |
387 |
caatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcatatc |
474 |
Q |
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| T |
42815403 |
caatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcatatc |
42815316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 35064362 - 35064275
Alignment:
| Q |
387 |
caatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcatatc |
474 |
Q |
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| T |
35064362 |
caatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcatatc |
35064275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 388 - 474
Target Start/End: Complemental strand, 43025617 - 43025531
Alignment:
| Q |
388 |
aatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcatatc |
474 |
Q |
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| T |
43025617 |
aatagagtaatttacaatggcggtgtattataaatttaagagtgcaaaagattaccattcaattccaatggatggtccttttatatc |
43025531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 404 - 471
Target Start/End: Original strand, 41562476 - 41562543
Alignment:
| Q |
404 |
atggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcat |
471 |
Q |
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| T |
41562476 |
atggcggtgtattataaatttaaaagtgcaagagattatgattcaatttccatggatggtcctttcat |
41562543 |
T |
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