View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2468_low_1 (Length: 633)
Name: NF2468_low_1
Description: NF2468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2468_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 38436116 - 38435497
Alignment:
| Q |
1 |
tgtttttgtataagctttaaaacctgttttcataagttcactcgaataatcatccaagttcttatgcccgtagataatttcaatttaagtcaattcaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38436116 |
tgtttttgtataagctttaaaacctgttttcataagttcactcgaataatcatacaagtgcttatgccagtagataatttcaatttaagtcaattcaagc |
38436017 |
T |
|
| Q |
101 |
aggtcctcataagagtgttgcgaatttaagtgcttaattcggcttctgttgtatgcagattgttaatcttcattatatgcttagcaaggctcaaatcaac |
200 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38436016 |
aggtcctcctaagggtgttgcgaatttaactgcttaatgcggattctgttgtatgcagattgttaatcttcattatatgcttagcaaggctcaaatcaaa |
38435917 |
T |
|
| Q |
201 |
tctaggccaactgttttatggtgttataaggaaaagcttgaactaagcaggtttgttgatataattgatggatggacgatgaatcggtgttgtgttgata |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38435916 |
tccaggccaactgttttatggtgttataaggaaaagcttgaactaagcaggtttgttgatataattgatggatggacgatgaatcggtgttgtgttgata |
38435817 |
T |
|
| Q |
301 |
aaccatgatttgtctgtttaagtttatttgaacttgattagaacatgatttttaatgtatgcagtcatagcaaaaaacgcgccaagcagatgnnnnnnnt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38435816 |
aaccatgatttgtctgtttaagtttatttgaacttgattagaacatgattttgaatgtatgcagtcatagcaaaaaacgcgccaagcagatgaaaaaaat |
38435717 |
T |
|
| Q |
401 |
gacgactcagggtcttttggatcctgagaaagccgatgcattttccttgtttatgataggcgggggattaactcattgtttatataagcattctgaaaga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38435716 |
gacgactcagggtcttttggatcctgagaaagccgatgcattttcattgtttatgataggcgggggattaactcattgtttatataagcattctgaaaga |
38435617 |
T |
|
| Q |
501 |
gttcttggcaacaccttcgggatgtgtgttcttcaggtatcttacacttcatactatttcaatcacttgtcctttctaggatgtatttcaccctgcagca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38435616 |
gttcttggcaacaccttcgggatgtgtgttcttcaggtatcttacacttcatactatttcaatcacttgtcctttctaggatgtatttcaccctgcagca |
38435517 |
T |
|
| Q |
601 |
taaaataattggttttgcct |
620 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38435516 |
taaaataattggttttgcct |
38435497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 10311538 - 10311455
Alignment:
| Q |
154 |
tgcagattgttaatcttcattatatgcttagcaaggctcaaatcaactctaggccaactgttttatggtgttataaggaaaagc |
237 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||| || ||||| || || |||||||||||||||||||| ||||| |||| |
|
|
| T |
10311538 |
tgcagattgtaaatcttcattacatgcttagccaggcacagatcaaatccagcccaactgttttatggtgttacaaggacaagc |
10311455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University