View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2468_low_2 (Length: 547)
Name: NF2468_low_2
Description: NF2468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2468_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 112 - 532
Target Start/End: Original strand, 8564026 - 8564447
Alignment:
| Q |
112 |
ctttaaggttataccattaaatgaggccatgaacaagtgaagagaggtggaagccagtaagagaacatttcaccatagagaagggtcagtgcccatatga |
211 |
Q |
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| T |
8564026 |
ctttaaggttataccattaaatgaggccatgaacaagtgaagagaggtggaagccagtaagagaacatttcaccatagagaagggtaagtgcccatatga |
8564125 |
T |
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| Q |
212 |
gacatagcaagaaagtcaactcttgttgcttcatcactgatcctcaatgaattcaaagcaaggtttgaatccttgaagagtttaatgttacactcttcca |
311 |
Q |
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| T |
8564126 |
gacatagtaagaaagtcaactcttgttgcttcatcactgatactcaatgaattcaaagcaaggtttgaatctttgaagagtttaatgttacactcttcca |
8564225 |
T |
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| Q |
312 |
aattaggaaacctcagttcttggtcttttctttatttcagannnnnnnnnnctttctaaactttactttaaactattattacgctagttagttagtttta |
411 |
Q |
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| T |
8564226 |
aattaggaaacctcagttctcggtcttttctttatttcagattttttttttctttctaaactttactttaaactattattacgcaagttagttagtttta |
8564325 |
T |
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| Q |
412 |
attaaggtgagatgtaagtaagattgggaaggaaagtatcaatacattttgaacgagtatccaaattataaaatagttgatagtt-attcccgtgaactt |
510 |
Q |
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| T |
8564326 |
attaaggtgagatgtaagtaagatagggaaggaaagtatcaatacattttgaacactcatccaaattataaaatagttcatcgttgattcccgtgagctt |
8564425 |
T |
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| Q |
511 |
agtttagttgataaatatattg |
532 |
Q |
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| T |
8564426 |
agtttagttgataaatatattg |
8564447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 8563899 - 8563949
Alignment:
| Q |
2 |
atcaaaaacataatagatccaacacatcacaatggcagctcaataatatcc |
52 |
Q |
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| T |
8563899 |
atcaaaaacataatagatccaacacatcacaatggcagctcaataatatcc |
8563949 |
T |
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