View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2468_low_3 (Length: 479)
Name: NF2468_low_3
Description: NF2468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2468_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 42 - 468
Target Start/End: Original strand, 24260300 - 24260729
Alignment:
| Q |
42 |
tagtaatccccttttataatcatgagcatttaattaattc-tatgttcataatcaccaatgatgaatcagaatgattagtgata--ataggttatagtac |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24260300 |
tagtaatccccttttataatcatgagcatttaattaattcctttgttcataatcaccaatgatgaatcagaatgattagtgatataataggttatagtac |
24260399 |
T |
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| Q |
139 |
atcaaacaggggaggtttcattatcttgacaagtatagtaacacagctgtaagctctctccatagtcatcatgactctaaaatttcaatctctgacattg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
24260400 |
atcaaacaggggaggtttcattatcttgacaagtatagtaacacagctgtaagctctctccatagtcatcatgactctaagatttaaatctctgacattg |
24260499 |
T |
|
| Q |
239 |
ttgataaattttgtttgggcagcagttcattggattttgattgcctgtagtcggagtcctgtgtattcaggacatcgacggatgttggatcaagatcaga |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24260500 |
ttgataaattttgtttgggcagcagttcattggattttgattgcctgtagtcggagtcctgtgtattcaggacatcgacggatgttggatcaagatcaga |
24260599 |
T |
|
| Q |
339 |
caattcagattttaaaaaatatcaaaatcagcatgttttctgcacaattcaatcctgatccaacaattatcaatgctaaaaattcaagaacgcagagatg |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24260600 |
caattcagattttaaaaaatatcaaaatcagcatgttttctgcacaattcaatcctgatccaacaattatcaatgctaaaaattcaagaacacagagatg |
24260699 |
T |
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| Q |
439 |
ttggctgcatgcaaccaaaatccggttcat |
468 |
Q |
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| T |
24260700 |
ttggctgcatgcaaccaaaatccggttcat |
24260729 |
T |
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