View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2468_low_4 (Length: 431)
Name: NF2468_low_4
Description: NF2468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2468_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 8165076 - 8164656
Alignment:
| Q |
1 |
agagtcgtcttccgatcattcttttgtatgttgtagattcagtcaacaattcaccaaagtatttatgcaattgaagttgaggttgcataggaattggaca |
100 |
Q |
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| T |
8165076 |
agagtcgtcttccgatcattcttttgtatgttgtagattcagtcaacaattcaccaaagtatttatgcaattgaagttgaggttgcataggaattggaca |
8164977 |
T |
|
| Q |
101 |
aaagttccaaataaaacacaataaatatcacatnnnnnnntttagaaaaagattctcctttttgttagttaacctgtaaagtttttgatgttattgaaca |
200 |
Q |
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| T |
8164976 |
aaagttccgaataaaacacaataaatatcacataaaaatttttagaaaaagattctcctttttgttagttaacctgtaaagtttttgatgttattgaata |
8164877 |
T |
|
| Q |
201 |
ttaagtaaaacttaatcacaaaattcattaggaaaccacaacatccaaaatttcattatataaaggtatgcgtctgcaatgacgatctgagctttgacat |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
8164876 |
ttaagtaaaacttaatcacaaaattctttaggaaaccacaacatccaaaatttcattatataaaggtatgcgtctgcgacgacgatctgagctttgacat |
8164777 |
T |
|
| Q |
301 |
aacctttgtttatattgctgaattcgaagtgcaactgaagttatattggtcacatttaagcgcagttttttcacaatgttaatgattgtcatacgaccac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8164776 |
aacctttgtttatattgctgaattcgaagtgcaactgaagttatattggtcacatttaagcgcagttttttcacaatgttaatgattgtcatacgaccac |
8164677 |
T |
|
| Q |
401 |
aaacgttaccacaaacctttg |
421 |
Q |
| |
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| T |
8164676 |
aaacgttaccacaaacctttg |
8164656 |
T |
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