View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2468_low_5 (Length: 251)
Name: NF2468_low_5
Description: NF2468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2468_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 51166312 - 51166043
Alignment:
| Q |
1 |
cataaaaaattccaaataaataaatgaattgattatagttctatgtggatgatttaatgtccacagttgtaacaattcaacataaagttcagaaaatcag |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
51166312 |
cataaaaaattccaaataaataaatgaattgattacagttctatgtggatgatttaatgtccaccgctgtaacaattcaacataaggttcagaaaatcaa |
51166213 |
T |
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| Q |
101 |
ggagcagatcacatcagaatg---------------------gtaggaatgattgtgaacctttagatttgtaattgatggcaaagattagaaagtcaca |
179 |
Q |
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| |||| ||||||| |||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
51166212 |
gaagcatatcacatgagaatgacaaatatatatatgagaatggtaaaaatgattgtgagcctttaaatttgtaattgatggcaaagattagaaagtcaca |
51166113 |
T |
|
| Q |
180 |
ataaaggtatcacgtgacttgtgttttcttgtttttgggtttcgaaatctctttcttcttcatctcactc |
249 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||| |
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| T |
51166112 |
ataaaggtatcacgtggtttgtgttttcttatttttgggttacgaaatctctttcttctccatctcactc |
51166043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 37409928 - 37409797
Alignment:
| Q |
118 |
aatggtaggaatgattgtgaacctttagatttgtaattgatggcaaagattagaaagtcacaataaaggtatcacgtgacttgtgttttcttgtttttgg |
217 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| || |
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| T |
37409928 |
aatgataggaatgattgtgggcttttagatttgtaattgatggcagagattagaaagtcgcaataaaggtatcacgtgacttgtgttttcttatttctga |
37409829 |
T |
|
| Q |
218 |
gtttcgaaatctctttcttcttcatctcactc |
249 |
Q |
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| T |
37409828 |
gttacgaaatctctttcttctccatctcactc |
37409797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 23709565 - 23709670
Alignment:
| Q |
116 |
agaatggtaggaatgattgtgaacc-tttagatttgtaattgatggcaaagattagaaagtcacaataaaggtatcacgtgacttgtgttttcttgtttt |
214 |
Q |
| |
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|||||| ||||||||||||||| || |||||||||||||||||||| | |||||||| ||||||||||||||| |||||| |||||| |||||||||| | |
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| T |
23709565 |
agaatgataggaatgattgtgagccctttagatttgtaattgatggtagagattagatagtcacaataaaggtgtcacgtaacttgtattttcttgttgt |
23709664 |
T |
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| Q |
215 |
tgggtt |
220 |
Q |
| |
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|||||| |
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| T |
23709665 |
tgggtt |
23709670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 23728021 - 23728126
Alignment:
| Q |
116 |
agaatggtaggaatgattgtgaacc-tttagatttgtaattgatggcaaagattagaaagtcacaataaaggtatcacgtgacttgtgttttcttgtttt |
214 |
Q |
| |
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|||||| ||||||||||||||| || |||||||||||||||||||| | |||||||| ||||||||||||||| |||||| |||||| |||||||||| | |
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| T |
23728021 |
agaatgataggaatgattgtgagccctttagatttgtaattgatggtagagattagatagtcacaataaaggtgtcacgtaacttgtattttcttgttgt |
23728120 |
T |
|
| Q |
215 |
tgggtt |
220 |
Q |
| |
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|||||| |
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|
| T |
23728121 |
tgggtt |
23728126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 23746477 - 23746582
Alignment:
| Q |
116 |
agaatggtaggaatgattgtgaacc-tttagatttgtaattgatggcaaagattagaaagtcacaataaaggtatcacgtgacttgtgttttcttgtttt |
214 |
Q |
| |
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|||||| ||||||||||||||| || |||||||||||||||||||| | |||||||| ||||||||||||||| |||||| |||||| |||||||||| | |
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| T |
23746477 |
agaatgataggaatgattgtgagccctttagatttgtaattgatggtagagattagatagtcacaataaaggtgtcacgtaacttgtattttcttgttgt |
23746576 |
T |
|
| Q |
215 |
tgggtt |
220 |
Q |
| |
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|||||| |
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|
| T |
23746577 |
tgggtt |
23746582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 1274529 - 1274497
Alignment:
| Q |
116 |
agaatggtaggaatgattgtgaacctttagatt |
148 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
1274529 |
agaatggtaggaatgattgtgagcctttagatt |
1274497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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