View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2470_high_10 (Length: 219)

Name: NF2470_high_10
Description: NF2470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2470_high_10
NF2470_high_10
[»] chr3 (3 HSPs)
chr3 (5-202)||(47415050-47415247)
chr3 (15-101)||(47398416-47398502)
chr3 (6-100)||(46543041-46543135)
[»] chr8 (1 HSPs)
chr8 (19-100)||(21466045-21466126)
[»] chr7 (3 HSPs)
chr7 (22-100)||(16729332-16729410)
chr7 (22-100)||(17706404-17706482)
chr7 (22-100)||(17716392-17716470)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 47415050 - 47415247
Alignment:
Q  5 agtggagtagcaaaggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatg 104  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415050 agtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatg 47415149  T
Q  105 gttcatatctcttctattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggag 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415150 gttcatatctcttctattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggag 47415247  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 47398416 - 47398502
Alignment:
Q  15 caaaggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtc 101  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  47398416 caaaggcgaaaacacaacattcttttctttaaaattttgtttggagaacaaatggctggccatggtcatggaaaccttggttaggtc 47398502  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 46543135 - 46543041
Alignment:
Q  6 gtggagtagcaaaggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 100  Q
    |||||||  |||||| ||||||||||| ||||||||||||| ||||| |||||||| |||||| ||||| |||||||  |||| |||| ||||||    
T  46543135 gtggagtgacaaaggtgaaaacacaacgttcttttctttaaattcttctttggagaacaaatgtttggcgatggtcacagaaaacttgtttaggt 46543041  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 21466045 - 21466126
Alignment:
Q  19 ggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 100  Q
    |||||||||||||||||  |||||||   |||||||||||||| |||||| ||||| |||||||  ||||||||| ||||||    
T  21466045 ggcgaaaacacaacattggtttctttgtattcttgtttggagaacaaatgtttggcaatggtcaaagaaaccttggttaggt 21466126  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 16729410 - 16729332
Alignment:
Q  22 gaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 100  Q
    ||||||||||| ||||||||||| |||||||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  16729410 gaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 16729332  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 17706482 - 17706404
Alignment:
Q  22 gaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 100  Q
    ||||||||||| ||||||||||| |||||||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  17706482 gaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 17706404  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 17716470 - 17716392
Alignment:
Q  22 gaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 100  Q
    ||||||||||||||||||||||| |||| ||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  17716470 gaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 17716392  T

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