View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2470_high_12 (Length: 212)
Name: NF2470_high_12
Description: NF2470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2470_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 9956582 - 9956786
Alignment:
| Q |
1 |
aacttaaattaaaatttaaacaaattaaacttcaagaatattgaatttagtctgattatcatcgatgatttttattaagatttgcaattaagaaataaaa |
100 |
Q |
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| T |
9956582 |
aacttaaattaaaatttaaacatattaaacttcaagaatattgaatttagtctgattatcatcgatgatttttattaagatttgcaattaagaaataaaa |
9956681 |
T |
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| Q |
101 |
tgaaaactggtcgtaattttgttgatttgcctacaatgagtctgatggagaatttaatttcagaaacccattcaacaatgtcatttgtaatttgattttg |
200 |
Q |
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| T |
9956682 |
tgaaaactggtcgtaattttgttgatttgcctacaatgagtctgatggagaatttaatttcaaaaacccattcaacaatgtcatttgtaatttgattttg |
9956781 |
T |
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| Q |
201 |
atgat |
205 |
Q |
| |
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|||| |
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| T |
9956782 |
ttgat |
9956786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 5640443 - 5640500
Alignment:
| Q |
148 |
gagaatttaatttcagaaacccattcaacaatgtcatttgtaatttgattttgatgat |
205 |
Q |
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| T |
5640443 |
gagaatttaatttcagaaacctattcaacaatgtcttttgtaatttaattttgttgat |
5640500 |
T |
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