View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2470_low_1 (Length: 696)
Name: NF2470_low_1
Description: NF2470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2470_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 18107716 - 18108047
Alignment:
| Q |
15 |
gataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactct |
114 |
Q |
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| T |
18107716 |
gataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttggaacagtgcaagtttggtaactct |
18107815 |
T |
|
| Q |
115 |
ttaggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttctttta |
214 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18107816 |
ttaggtatgct---gattttgtatactagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatttttctttggctttgttctttta |
18107912 |
T |
|
| Q |
215 |
tcatgttttgaggtttggtctttgtgagcaaacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagttt |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18107913 |
tcatgttttgaggtttggtctttgtgagcagacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagttt |
18108012 |
T |
|
| Q |
315 |
atccaatcctaccgtcaaaccatgagacgaaaaca |
349 |
Q |
| |
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| T |
18108013 |
atccaatcctaccgtcaaaccatgagacgaaaaca |
18108047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 18138265 - 18137930
Alignment:
| Q |
16 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctt |
115 |
Q |
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| T |
18138265 |
ataatactgcctaataataaatataaatgcagaaattgaaatttcagaaggtaggtatgaatgtactatagtttggaacagtgcaagttaggtaactctt |
18138166 |
T |
|
| Q |
116 |
taggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttat |
215 |
Q |
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||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
18138165 |
tagatatcctg---attttgtatactagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatttttctttggcttcgttcttttat |
18138069 |
T |
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| Q |
216 |
catgttttgaggtttggtctttgtgag-caaacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagttt |
314 |
Q |
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| T |
18138068 |
catgttttgagg-ttggtctttgtgagaaaaacctattccaaat--acacacttagagattgaatgtatgaattgt--gagtatttattatcatgagttt |
18137974 |
T |
|
| Q |
315 |
atccaatcctaccgtcaaaccatgagacgaaaacaacaaatgta |
358 |
Q |
| |
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||||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
18137973 |
atccaatcctaccatcaaaccatgaccctaaaacaacaaatgta |
18137930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 395 - 541
Target Start/End: Original strand, 18083715 - 18083861
Alignment:
| Q |
395 |
gaagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttataaactactaactgagaaattttgaac |
494 |
Q |
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||||||||||| ||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
18083715 |
gaagcacatttgatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaattgagtttatttataacatactaactgagaagttttgaac |
18083814 |
T |
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| Q |
495 |
ttaaaatccatctcatgtaagctgaagatttaaccatatatgtcaat |
541 |
Q |
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||||||||||| || || |||| ||||||||||||||||||||||| |
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| T |
18083815 |
ttaaaatccatgtcgtgaaagccaaagatttaaccatatatgtcaat |
18083861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 18098195 - 18098397
Alignment:
| Q |
16 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctt |
115 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| | |||||||| |
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| T |
18098195 |
ataatactgtctaataggaaatatcaatgcagaaattgaaaatttagaaggtaggtatcaatgtactatagtttggaacagtaaaagttagataactctt |
18098294 |
T |
|
| Q |
116 |
taggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttat |
215 |
Q |
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||| ||| | |||||| || |||||||||||||||| || ||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |
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| T |
18098295 |
tag--atg-tcctgatt-----ttatagtaacatcttcccaggtcgggtttggtgaatccaagttctga---taatgtttctatggctttgttcttttat |
18098383 |
T |
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| Q |
216 |
catgttttgaggtt |
229 |
Q |
| |
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| |||||||||||| |
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| T |
18098384 |
cctgttttgaggtt |
18098397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 371 - 537
Target Start/End: Original strand, 18099162 - 18099325
Alignment:
| Q |
371 |
tttaagaagaaaatttagataactg-aagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttata |
469 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||| || |||||| |
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| T |
18099162 |
tttaaaaagaaaatttagatcactggaagcacatttcatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaatcaag----tttata |
18099257 |
T |
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| Q |
470 |
aactactaactgagaaattttgaacttaaaatccatctcatgtaagctgaagatttaaccatatatgt |
537 |
Q |
| |
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| |||||||||||| |||| |||||||||||||| | || |||| ||||||||||||||||||| |
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| T |
18099258 |
acacactaactgagaagtttttaacttaaaatccatgttgtgaaagccaaagatttaaccatatatgt |
18099325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 682
Target Start/End: Original strand, 18108953 - 18109015
Alignment:
| Q |
620 |
aaaacttacaaaaatatatctaactacgaacatttgggaaaaatatgaataaccatgcatttg |
682 |
Q |
| |
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| T |
18108953 |
aaaacttacaaaaatatatctaactacaaacatttgggaaaaatatgaataaccatgcatttg |
18109015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 15951824 - 15951715
Alignment:
| Q |
168 |
gtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtttggtctttgtgagc-aaacctattccaaatacacacac |
266 |
Q |
| |
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|||||||||||||||||||||| | |||||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||| |
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| T |
15951824 |
gtgaatccaatttctgatgttatt-tttcttcggcttcgttcttttatcatgtttaaagg-ttggtctttgtgagcaaaacctattccaaat--acacac |
15951729 |
T |
|
| Q |
267 |
ttagagactgaatg |
280 |
Q |
| |
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||||||| |||||| |
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| T |
15951728 |
ttagagattgaatg |
15951715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 18082900 - 18082957
Alignment:
| Q |
16 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtat |
73 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18082900 |
ataatactgcctaataggaaatatcaatgcagaaattgaaaatttagaaggtaggtat |
18082957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 519 - 567
Target Start/End: Original strand, 18108835 - 18108883
Alignment:
| Q |
519 |
aagatttaaccatatatgtcaatgatcactgttggtccttaatgctaac |
567 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18108835 |
aagatttaaccatatatgtcaatgatcactgttggtccttaatgctaac |
18108883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 11547683 - 11547626
Alignment:
| Q |
33 |
gaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
90 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
11547683 |
gaaatataaatgcagaaattggaaatttagaaggtatgtatcaatgtactatagtttg |
11547626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 18082978 - 18083074
Alignment:
| Q |
130 |
attttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtt |
229 |
Q |
| |
|
||||||||| ||| |||||||||||| || |||||||||||||||| |||||| ||||||||| |||||||||||||||| | |||||||||||| |
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| T |
18082978 |
attttgtatattaggaacatcttcccaggtcaggtttggtgaatccaagctctgat---aatgtttctatggctttgttcttttaacttgttttgaggtt |
18083074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 11552442 - 11552387
Alignment:
| Q |
35 |
aatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
90 |
Q |
| |
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||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||| |
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|
| T |
11552442 |
aatataaatgcagaaattggaaatttaaaaggtacgtatcaatgtactatagtttg |
11552387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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