View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2470_low_11 (Length: 219)
Name: NF2470_low_11
Description: NF2470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2470_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 47415050 - 47415247
Alignment:
| Q |
5 |
agtggagtagcaaaggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatg |
104 |
Q |
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| T |
47415050 |
agtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatg |
47415149 |
T |
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| Q |
105 |
gttcatatctcttctattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggag |
202 |
Q |
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| T |
47415150 |
gttcatatctcttctattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggag |
47415247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 47398416 - 47398502
Alignment:
| Q |
15 |
caaaggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtc |
101 |
Q |
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| T |
47398416 |
caaaggcgaaaacacaacattcttttctttaaaattttgtttggagaacaaatggctggccatggtcatggaaaccttggttaggtc |
47398502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 46543135 - 46543041
Alignment:
| Q |
6 |
gtggagtagcaaaggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
100 |
Q |
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| T |
46543135 |
gtggagtgacaaaggtgaaaacacaacgttcttttctttaaattcttctttggagaacaaatgtttggcgatggtcacagaaaacttgtttaggt |
46543041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 21466045 - 21466126
Alignment:
| Q |
19 |
ggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
100 |
Q |
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| T |
21466045 |
ggcgaaaacacaacattggtttctttgtattcttgtttggagaacaaatgtttggcaatggtcaaagaaaccttggttaggt |
21466126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 16729410 - 16729332
Alignment:
| Q |
22 |
gaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
100 |
Q |
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| T |
16729410 |
gaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt |
16729332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 17706482 - 17706404
Alignment:
| Q |
22 |
gaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
100 |
Q |
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| T |
17706482 |
gaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt |
17706404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 17716470 - 17716392
Alignment:
| Q |
22 |
gaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt |
100 |
Q |
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| T |
17716470 |
gaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt |
17716392 |
T |
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