View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2470_low_2 (Length: 571)
Name: NF2470_low_2
Description: NF2470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2470_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Complemental strand, 225850 - 225314
Alignment:
| Q |
16 |
tgtgatgatagagatattcataagagcaggagtgagtgattggacacaaatatcatgtgtgaagaagcagtgggcatctctttttcgaactgaatgtttt |
115 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
225850 |
tgtgatgatagagatattcataagaacagaagtgagtgattggacacaaatatcatgtgtgaagaagcagtgggcatctcttttccgaactgaatgtttt |
225751 |
T |
|
| Q |
116 |
tggcaagctgctctttctcacatctatccattcaccaatccttctcaaacttggcctggacctattcctccaggtttagccagaaggtaagtaaaacttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225750 |
tggcaagctgctctttctcacatctatccattcaccaatccttctcaaacttggcctggacctattcctccaggtttagccagaaggtaagtaaaacttg |
225651 |
T |
|
| Q |
216 |
atcaaagattgttacaatcaggattctggttcggattgtatgtagtttatagtttataattatattaatgtttcacaaattgatgttgtatgctaatgat |
315 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225650 |
atcaaagattgttacaatcaggattctagttcggattgtatatagtttatagtttataattatattaatgtttcacaaattgatgttgtatgctaatgat |
225551 |
T |
|
| Q |
316 |
ttcaggagattcatggccttacatataagtcaacaaatatttgcttctgatcctgatatacaagtggatgagattgttgggcacagttatctgtttttga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
225550 |
ttcaggagattcatggccttacatataagtcaacaaatatttgcttctgatcctgatatacaagtggatgaaattgttgggcacagttatctgtttttga |
225451 |
T |
|
| Q |
416 |
aagagcagcttcaactttcgattatgcctcctcatggtggaatacttcacggaaccatgattggtatggcatgccccaccttctttacttttattgttac |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225450 |
aagagcagcttcaactttcgattatgcctcctcatggtggaatacttcacggaaccatgattggtatggcatgccccaccttctttacttttattgttac |
225351 |
T |
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| Q |
516 |
acttatatctttatgtccttttggtttatctcgtaac |
552 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
225350 |
acttatatctttatgtccttttggtttatctcgtaac |
225314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 233441 - 233108
Alignment:
| Q |
16 |
tgtgatgatagagatattcataagagcaggagtgagtgattggacacaaatatcatgtgtgaagaagcagtgggcatctctttttcgaactgaatgtttt |
115 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233441 |
tgtgatgatagagatattcataagaacagaagtgagtgattggacacaaatatcatgtgtgaagaagcagtgggcatctctttttcgaactgaatgtttt |
233342 |
T |
|
| Q |
116 |
tggcaagctgctctttctcacatctatccattcaccaatccttctcaaacttggcctggacctattcctccaggtttagccagaaggtaagtaaaacttg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
233341 |
tggcaagctgctctttctcacatctatccattcaccaatccttctcaaacttggcctagacctattcctccaggtttagtcagaaagtaagtaaaacttg |
233242 |
T |
|
| Q |
216 |
atcaaagattgttacaatcaggattctggttcggattgtatgtagtttatagtttataattatattaatgtttcacaaattgatgttgtatgctaatgat |
315 |
Q |
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|| ||||||||||| ||||||||| |||| |||| |||||||||||||| ||||||| |||||||||||||||| ||||||| |||| || |
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| T |
233241 |
at-taagattgttactatcaggatttgagttctgattctatgtagtttatag--------tatattagtgtttcacaaattgatattgtatgttaataat |
233151 |
T |
|
| Q |
316 |
ttcaggagattcatggccttacatataagtcaacaaatatttg |
358 |
Q |
| |
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||||||| ||||||| || ||||||||| ||||||| |||||| |
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| T |
233150 |
ttcaggatattcatgaccatacatataaatcaacaattatttg |
233108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 233070 - 233010
Alignment:
| Q |
446 |
ctcatggtggaatacttcacggaaccatgattggtatg----gcatgccccaccttcttta |
502 |
Q |
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||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
233070 |
ctcatagtggaatacttcacggaaccatgattggtgtgtgtgggatgccccaccttcttta |
233010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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