View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2470_low_4 (Length: 396)
Name: NF2470_low_4
Description: NF2470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2470_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 40749467 - 40749831
Alignment:
| Q |
18 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaattcaattcacnnnnnnnnn-agtatcaaaaaatttaggtgactttggtt |
116 |
Q |
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| T |
40749467 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaattcaattcacttttttttttagtataaaaaaatttaggtgactttggtt |
40749566 |
T |
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| Q |
117 |
tcaaagaccaaagtcatgcaaatttaaacattcaattccttcatactgattttttataaataaagaagtttctgaaaatttattgtttttgatgtggatg |
216 |
Q |
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| T |
40749567 |
tcaaagaccaaagtcatgcaaatttaaacattcaattccttcatactgattttttataaataaagaagtttctgaaaatttcttgtttttgatgtggatg |
40749666 |
T |
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| Q |
217 |
aaagaactgtttttcttttcaattacttctcatttgcattatgtatgaatttaatgcatacttcctcataatttaattattcacaaattaagacaatgat |
316 |
Q |
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| T |
40749667 |
aaaaaactgtttttcttttcaattacttctcatttgcattatgtatgaatttaatgcatacttcctcataatttaattattcacaaattaagacaatgat |
40749766 |
T |
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| Q |
317 |
ctagtactactgcatagtgtaaatgattaggtttctaatggtacattttatttcacaggaaggat |
381 |
Q |
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| T |
40749767 |
ctagtactactgcatagtgtaaatgattaggtttctaatggtacattttatttcacaggaaggat |
40749831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 31644111 - 31644073
Alignment:
| Q |
14 |
aacctgtggtactagagaatataagtgtgattgtggtac |
52 |
Q |
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| T |
31644111 |
aacctgtggtactcgagaatataaatgtgattgtggtac |
31644073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 42287194 - 42287244
Alignment:
| Q |
18 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaa |
68 |
Q |
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| T |
42287194 |
tgtggtactagagaatatagatgtgattgtggcaccctcttctctaggtaa |
42287244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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