View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2470_low_5 (Length: 358)
Name: NF2470_low_5
Description: NF2470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2470_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 414754 - 414430
Alignment:
| Q |
16 |
gttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatgagtcgggaaacaacatagtcttaaaatcataacagttctaa |
115 |
Q |
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| T |
414754 |
gttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatgagtcgggaaacaacatagtcttaaaatcataacagttctaa |
414655 |
T |
|
| Q |
116 |
atgcactgagaaagagaaatcataaaccagtagtatgaaaaaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagt |
215 |
Q |
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| T |
414654 |
gtgcactgagaaagagaaatcataaaccagtagtatgaaacaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagt |
414555 |
T |
|
| Q |
216 |
caagaaatcgtctgactttagatttggcatctttgactatttgggatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414554 |
caagaaatcgtctgactttagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttc |
414455 |
T |
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| Q |
316 |
cttatcagttgcttctttcaattca |
340 |
Q |
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||||||||||||||||||||||||| |
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| T |
414454 |
cttatcagttgcttctttcaattca |
414430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 166 - 322
Target Start/End: Original strand, 37211616 - 37211772
Alignment:
| Q |
166 |
aggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgggatatc |
265 |
Q |
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|||||| |||||| ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||| ||||||| ||| |||| ||| | |
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| T |
37211616 |
aggagaagaaattacaacatactaaagcaaaccatcaattagtgagcaatcaacaaatcgtctgactttagatttgacatcttttactctttgagatgtt |
37211715 |
T |
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| Q |
266 |
ttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
322 |
Q |
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||||||||||||| ||| |||| |||||| ||||| |||||||| || |||||| |
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| T |
37211716 |
ttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatca |
37211772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 322
Target Start/End: Original strand, 37217299 - 37217454
Alignment:
| Q |
167 |
ggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgggatatct |
266 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||||| | ||| | || ||| |
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| T |
37217299 |
ggagatgaaattgcaacatactaaatcaaatcatcaaccagtgagccattaagaaattgtctgactttagatttgccatctttgattcttttgaatgtct |
37217398 |
T |
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| Q |
267 |
tggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
322 |
Q |
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|||||||||||| ||| |||||||||||| | ||| |||||||| || |||||| |
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| T |
37217399 |
tggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatca |
37217454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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