View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2470_low_9 (Length: 240)
Name: NF2470_low_9
Description: NF2470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2470_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 29441495 - 29441276
Alignment:
| Q |
18 |
caaaatatctcgaataccttaatcttagaaagtgttctagcattgacaatttcccagatgtattggcaaaagtggaaaatatgaaaaatattgacatagg |
117 |
Q |
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| T |
29441495 |
caaaatatctcgaataccttaatcttagaaagtgttctagcattgataatttcccagatgtattggcaaaagtggaaaatatgaaaaatattgacatagg |
29441396 |
T |
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| Q |
118 |
agggacagccatnnnnnnntttccaagttcaattgaaaacttcaaaggtcttgaagagttagtattgacatcatgctcaaatgttgaggatctaccaagt |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
29441395 |
agggacagccataaaaaaatttccaagttcaattgaaaacttcaaaggtcttgaagaattagtattgacatcatgctccaatgttgaggatctacctagt |
29441296 |
T |
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| Q |
218 |
aacacagatatgtttcaaaa |
237 |
Q |
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|||||||||||||||||||| |
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| T |
29441295 |
aacacagatatgtttcaaaa |
29441276 |
T |
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