View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2471_low_1 (Length: 703)
Name: NF2471_low_1
Description: NF2471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2471_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 502
Target Start/End: Complemental strand, 38309087 - 38308595
Alignment:
| Q |
11 |
cacagacccattgttagtatgttttgctttggcgtttgtcaaactcaatcccacttttaatcttttctctaggtaatgttttaaactaaatttgattatt |
110 |
Q |
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| T |
38309087 |
cacagacccattgttagtatgttttgctttggcgtttgtcaaactcaatcccacttttaatcttttctctaggtaatgttttaaactaaatttgattatt |
38308988 |
T |
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| Q |
111 |
ttttgttggaattgattgacagtaaggtgattagaagtgaagcaatggcagtaaatgtgagttttttctctttaggcagagcagttgaatgtgagctggg |
210 |
Q |
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| T |
38308987 |
ttttgttggaattgattgacagtaaggtgattagaagtgaagcaatggcagtaaatgtgagttttttctctttaggcagagcagttgaatgtgagctggg |
38308888 |
T |
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| Q |
211 |
agtttaaaatattgtagcttgtagtgctcatttagtttttaattttgataaataaggtagt-ggtctttaaactataaatctatctaaacacgaacaatg |
309 |
Q |
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| T |
38308887 |
agtttaaaatattgtagcttgtagtgctcatttagtttttaattttgataaataaggtagtgggtctttaaactataaatctatctaaacacgaataatg |
38308788 |
T |
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| Q |
310 |
ttaatgaaaatattaatttaaattcaaatgttagctaaactcagttattttttgcagcagattannnnnnnagaaaaataattaagtttgtgtgctgagc |
409 |
Q |
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| T |
38308787 |
ttaatgaaaatattaatttaaattcaaatgttagctaaactcagttattttttgcagcagattatttttttagaaaaataattaagtttgtgtgctgagc |
38308688 |
T |
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| Q |
410 |
aacgtattcacaaacagcccatgcaactatacaaattaggattgcatgtggttgaattcaaggacatgatcttgcgtttatgctaaactaccg |
502 |
Q |
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| T |
38308687 |
aacgtattcacaaacagcccatgcaactatacaaattaggattgcatgtggttgaattcaaggacatgatcttgcgtttatgctaaactaccg |
38308595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 578 - 677
Target Start/End: Complemental strand, 38308519 - 38308420
Alignment:
| Q |
578 |
gtaggggcgtggctctacgaggcccccctcacccatcaaaaccaatcttctggtaggnnnnnnncctcataactatcgaaatccatcttttgacagatgt |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38308519 |
gtaggggcgtggctctacgaggcccccctcacccatcagaaccaatcttctggtaggtttttttcctcataactatcgaaatccatcttttgacagatgt |
38308420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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