View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2471_low_4 (Length: 275)
Name: NF2471_low_4
Description: NF2471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2471_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 31623873 - 31623613
Alignment:
| Q |
11 |
gtagcataggtggaggaggattggggactggtccacacacgaattttacaaagctaccaaaa------------gattctgatgatgatgaagatcaact |
98 |
Q |
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| T |
31623873 |
gtagcacaggtggaggaggattggggactggtccacacacgaatattacaaagctaccaaaaaatccaccaaaagattctgatgatgatgaagatcaact |
31623774 |
T |
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| Q |
99 |
tgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcctctttgtaggttcaacattgtttaatgcacattaa |
198 |
Q |
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| T |
31623773 |
tgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcctctttgtaggttcaacattgtttaatgcacattaa |
31623674 |
T |
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| Q |
199 |
ttaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttat |
259 |
Q |
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| T |
31623673 |
ttaggagttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttat |
31623613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 76 - 261
Target Start/End: Complemental strand, 31605202 - 31605018
Alignment:
| Q |
76 |
tctgatgatgatgaagatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcctctttgtaggtt |
175 |
Q |
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| T |
31605202 |
tctgatgacgatgaagatcaacttgacaacacttttgcattcaatcttaccagcaatgagtgggtggtggtttttcttcttttgatcctctttgtaggtt |
31605103 |
T |
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| Q |
176 |
caacattgtttaatgcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttattg |
261 |
Q |
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| T |
31605102 |
caacattgtttaaagcacattaatta-gagttgttttaattaattttctcatgaaattaatggacgttgttttgggattcttattg |
31605018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 31619121 - 31618988
Alignment:
| Q |
74 |
attctgatgatgatgaagatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcctctttgtagg |
173 |
Q |
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| T |
31619121 |
attctgatgacgatgaagatcaacttgataacacttttgcattcaatcttactggcaaggagtgggtggtgatttttctttttttgatcctctttgtagg |
31619022 |
T |
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| Q |
174 |
ttcaacattgtttaatgcacattaattaggactt |
207 |
Q |
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| T |
31619021 |
ttcaacattgtttaaagcacattaactaggactt |
31618988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 31608397 - 31608315
Alignment:
| Q |
66 |
accaaaagattctgatgatgatgaagatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgattt |
148 |
Q |
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| T |
31608397 |
accaaaaaattctgatgatgatgaagatcaacttgacaacacttctgcattcaatcttactggcaatgagtgagtggtgattt |
31608315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 31612826 - 31612758
Alignment:
| Q |
190 |
gcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattctta |
258 |
Q |
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| T |
31612826 |
gcacattaattaggatttgttttaattaattttctcatgaaattaatggatattgttttggcattctta |
31612758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 31607398 - 31607340
Alignment:
| Q |
160 |
atcctctttgtaggttcaacattgtttaatgcacattaattaggacttgttttaattaa |
218 |
Q |
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| T |
31607398 |
atcctctttgtaggtttgacattgtttaaagcacattaattagaagttgatttaattaa |
31607340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 31612933 - 31612895
Alignment:
| Q |
66 |
accaaaagattctgatgatgatgaagatcaacttgacaa |
104 |
Q |
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| T |
31612933 |
accaaaaaattctgatgatgatgaagatcaacttgacaa |
31612895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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