View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2471_low_7 (Length: 246)

Name: NF2471_low_7
Description: NF2471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2471_low_7
NF2471_low_7
[»] chr2 (10 HSPs)
chr2 (18-164)||(13793809-13793955)
chr2 (137-184)||(9745341-9745388)
chr2 (134-181)||(41324886-41324933)
chr2 (140-181)||(41325021-41325062)
chr2 (136-184)||(24145218-24145266)
chr2 (142-181)||(24145157-24145196)
chr2 (139-172)||(13793669-13793702)
chr2 (206-238)||(13793467-13793499)
chr2 (136-183)||(14251212-14251259)
chr2 (139-184)||(22536996-22537041)
[»] chr1 (4 HSPs)
chr1 (132-183)||(17322073-17322124)
chr1 (139-184)||(30018694-30018740)
chr1 (139-181)||(31142429-31142471)
chr1 (137-181)||(7003082-7003126)
[»] chr8 (3 HSPs)
chr8 (134-185)||(44015921-44015972)
chr8 (145-184)||(9040962-9041001)
chr8 (138-183)||(41667870-41667915)
[»] chr7 (3 HSPs)
chr7 (145-183)||(37701250-37701288)
chr7 (145-184)||(48073132-48073171)
chr7 (137-181)||(36618093-36618137)
[»] chr4 (9 HSPs)
chr4 (137-183)||(12329034-12329080)
chr4 (136-182)||(54335419-54335465)
chr4 (150-183)||(34290742-34290775)
chr4 (137-184)||(3703571-3703618)
chr4 (149-184)||(53860901-53860936)
chr4 (145-183)||(2605479-2605517)
chr4 (139-179)||(2605367-2605407)
chr4 (145-181)||(21538845-21538881)
chr4 (136-184)||(53860772-53860820)
[»] chr5 (4 HSPs)
chr5 (139-184)||(8367019-8367064)
chr5 (139-184)||(10818882-10818927)
chr5 (136-184)||(4192007-4192055)
chr5 (143-183)||(4639536-4639576)
[»] chr3 (2 HSPs)
chr3 (139-183)||(26851186-26851229)
chr3 (143-183)||(26851336-26851376)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 13793955 - 13793809
Alignment:
Q  18 acaaggagttagtaatgttaccatcaagagaatcaggtgtggtccaggacatggtatcaggtaacctaaattgctgtttacattttttgccataaaattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  13793955 acaaggagttagtaatgttaccatcaagagaatcaggtgtggtccaggacatggtatcaggtaacctaaattgctgtttacattttttggcataaatttt 13793856  T
Q  118 agggtgataatctgatggaaattgctgttttgacatccattgtttct 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13793855 agggtgataatctgatggaaattgctgttttgacatccattgtttct 13793809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 9745341 - 9745388
Alignment:
Q  137 aattgctgttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9745341 aattgctgttttgacatccattgtttcttagaaacatgtggaaatgac 9745388  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 41324886 - 41324933
Alignment:
Q  134 ggaaattgctgttttgacatccattgtttcttagaaacacatggaaat 181  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  41324886 ggaaactgctgttttgacatccattgtttcttagaaacacattgaaat 41324933  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 41325062 - 41325021
Alignment:
Q  140 tgctgttttgacatccattgtttcttagaaacacatggaaat 181  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  41325062 tgctattttgacatccattgtttcttagaaacacatggaaat 41325021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 24145266 - 24145218
Alignment:
Q  136 aaattgctgttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    |||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  24145266 aaattgttgttttaacatccattatttcttagaaacacatggaaatgac 24145218  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 24145157 - 24145196
Alignment:
Q  142 ctgttttgacatccattgtttcttagaaacacatggaaat 181  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  24145157 ctgttttgacatccattgtttcttagaaacatatggaaat 24145196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 13793669 - 13793702
Alignment:
Q  139 ttgctgttttgacatccattgtttcttagaaaca 172  Q
    ||||||||||||||||||||||||||||||||||    
T  13793669 ttgctgttttgacatccattgtttcttagaaaca 13793702  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 13793499 - 13793467
Alignment:
Q  206 taatttgattactgttcctatgtatacatgata 238  Q
    |||||||||||||||||||||||||||||||||    
T  13793499 taatttgattactgttcctatgtatacatgata 13793467  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 14251259 - 14251212
Alignment:
Q  136 aaattgctgttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    |||||| |||||||||||  ||||||||||||||| ||||||||||||    
T  14251259 aaattgttgttttgacatttattgtttcttagaaatacatggaaatga 14251212  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 22537041 - 22536996
Alignment:
Q  139 ttgctgttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||| ||||||||||||| ||||| |||||| |||||||||||||    
T  22537041 ttgcttttttgacatccatcgtttcctagaaatacatggaaatgac 22536996  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 17322073 - 17322124
Alignment:
Q  132 atggaaattgctgttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  17322073 atggaaattgctgttttgacatatattgtttcttagaaacaaatggaaatga 17322124  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 30018740 - 30018694
Alignment:
Q  139 ttgctgttttgacatccattgtttcttag-aaacacatggaaatgac 184  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  30018740 ttgcttttttgacatccattgtttcctagaaaacacatggaaatgac 30018694  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 31142429 - 31142471
Alignment:
Q  139 ttgctgttttgacatccattgtttcttagaaacacatggaaat 181  Q
    ||||| |||||||||||||| |||| |||||||||||||||||    
T  31142429 ttgcttttttgacatccattatttcatagaaacacatggaaat 31142471  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 7003082 - 7003126
Alignment:
Q  137 aattgctgttttgacatccattgtttcttagaaacacatggaaat 181  Q
    ||||| ||||||||| | |||||||||||||||||||||| ||||    
T  7003082 aattgttgttttgactttcattgtttcttagaaacacatgaaaat 7003126  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 44015921 - 44015972
Alignment:
Q  134 ggaaattgctgttttgacatccattgtttcttagaaacacatggaaatgaca 185  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||||||    
T  44015921 ggaaattgctgttttgatgtccattgtttcttaaaaacacatgaaaatgaca 44015972  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 9041001 - 9040962
Alignment:
Q  145 ttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  9041001 ttttgacattcattgtttcctagaaacacatggaaatgac 9040962  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 41667870 - 41667915
Alignment:
Q  138 attgctgttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    |||| |||||| ||||| ||||||||||||||||||||| ||||||    
T  41667870 attgttgttttaacatctattgtttcttagaaacacatgaaaatga 41667915  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 37701250 - 37701288
Alignment:
Q  145 ttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  37701250 ttttgacatccattgtttcttagaaacatatggaaatga 37701288  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 48073171 - 48073132
Alignment:
Q  145 ttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  48073171 ttttgacatccattgtttcctaaaaacacatggaaatgac 48073132  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 36618093 - 36618137
Alignment:
Q  137 aattgctgttttgacatccattgtttcttagaaacacatggaaat 181  Q
    ||||| ||||||||||| |||||||||||| |||||| |||||||    
T  36618093 aattgttgttttgacattcattgtttcttaaaaacacttggaaat 36618137  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 12329080 - 12329034
Alignment:
Q  137 aattgctgttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||||    
T  12329080 aattgttgttttgacatccattgttttttagaaacacatgaaaatga 12329034  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 54335419 - 54335465
Alignment:
Q  136 aaattgctgttttgacatccattgtttcttagaaacacatggaaatg 182  Q
    |||||| |||| | |||||||||||||||||||||||||||||||||    
T  54335419 aaattgttgttctcacatccattgtttcttagaaacacatggaaatg 54335465  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 34290742 - 34290775
Alignment:
Q  150 acatccattgtttcttagaaacacatggaaatga 183  Q
    ||||||||||||||||||||||||||||||||||    
T  34290742 acatccattgtttcttagaaacacatggaaatga 34290775  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 3703571 - 3703618
Alignment:
Q  137 aattgctgttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||| |||||| ||||||||||||| ||||||||||||| |||||||    
T  3703571 aattgttgttttaacatccattgttttttagaaacacatgaaaatgac 3703618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 53860936 - 53860901
Alignment:
Q  149 gacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||||||||||||| ||||||||||||||||||||    
T  53860936 gacatccattgtttcctagaaacacatggaaatgac 53860901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 2605517 - 2605479
Alignment:
Q  145 ttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  2605517 ttttgacatccattatttcctagaaacacatggaaatga 2605479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 2605367 - 2605407
Alignment:
Q  139 ttgctgttttgacatccattgtttcttagaaacacatggaa 179  Q
    ||||| ||||||||| ||||||||| |||||||||||||||    
T  2605367 ttgcttttttgacattcattgtttcctagaaacacatggaa 2605407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 21538845 - 21538881
Alignment:
Q  145 ttttgacatccattgtttcttagaaacacatggaaat 181  Q
    ||||||||||||||||||  |||||||||||||||||    
T  21538845 ttttgacatccattgttttctagaaacacatggaaat 21538881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 53860772 - 53860820
Alignment:
Q  136 aaattgctgttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    |||||||| || | ||||||| |||||| ||||||||||||||||||||    
T  53860772 aaattgcttttctcacatccaatgtttcctagaaacacatggaaatgac 53860820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 8367019 - 8367064
Alignment:
Q  139 ttgctgttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  8367019 ttgcttttttgacatccattgtttcctagaaacccatagaaatgac 8367064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 10818927 - 10818882
Alignment:
Q  139 ttgctgttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||    
T  10818927 ttgcttttttgacatccattgttttctaaaaacacatggaaatgac 10818882  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 4192055 - 4192007
Alignment:
Q  136 aaattgctgttttgacatccattgtttcttagaaacacatggaaatgac 184  Q
    ||||||||||||  |||||||||||||| || ||||||||| |||||||    
T  4192055 aaattgctgtttacacatccattgtttcctacaaacacatgaaaatgac 4192007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 4639576 - 4639536
Alignment:
Q  143 tgttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    ||||||||| | |||||||||||||||||||||| ||||||    
T  4639576 tgttttgaccttcattgtttcttagaaacacatgaaaatga 4639536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 26851186 - 26851229
Alignment:
Q  139 ttgctgttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  26851186 ttgctgttttgacatcca-tgattcttagaaacacatgaaaatga 26851229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 26851376 - 26851336
Alignment:
Q  143 tgttttgacatccattgtttcttagaaacacatggaaatga 183  Q
    |||||||||||| ||||||||||| ||||||||| ||||||    
T  26851376 tgttttgacatctattgtttcttaaaaacacatgaaaatga 26851336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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