View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472-Insertion-2 (Length: 686)
Name: NF2472-Insertion-2
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 9 - 516
Target Start/End: Original strand, 35098670 - 35099176
Alignment:
| Q |
9 |
catgatggatgatgaataatgctaggagtttggttaatcttatattggatgatgataccatgtcttctgtaataagctctataaaaatctcctctagtta |
108 |
Q |
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| T |
35098670 |
catgatggatgatgaataatgctaggagtttggttaatctcatattggattatgataccatgtcttctgtaataagctctataaaaatctcctctagtta |
35098769 |
T |
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| Q |
109 |
aattaagaatgtagacttcaaatatttctatgaaatttactctaaatacttgagcaaattcctccaccgccaatttctagaatgtttgataaacccattg |
208 |
Q |
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| T |
35098770 |
aattaagaatgtagacttcaattatttctatgaaatttactctaaatacttgagcaaattcctccaccgccaatttctagaatgtttgataaacccattg |
35098869 |
T |
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| Q |
209 |
gacttcaatggctctttatgttgtatcttgtttactaacttcaatctcatctttttagataattatgagctattgttgtattgatttactccattttttc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
35098870 |
gacttcaatggctctttatgttgtatcttgtttactaacttcaatctcatctttttagataattatgagctcttgttgtattgatttactccattttgtc |
35098969 |
T |
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| Q |
309 |
atttagagctacttcattgaatgtttcaaagttctaggacggcaacacgtcttctttcattagatttagttgagaaccttgtacctcaacttggaaaaca |
408 |
Q |
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| T |
35098970 |
atttatagctacttcattgaatgtttc-aagttctaggaaagcaacacgtcttctttcattagatttagttgagaactttgtacctcaacttggaataca |
35099068 |
T |
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| Q |
409 |
attaacactttggaatttctggtaaatcattccagctacnnnnnnnncccctccatgtattttcttcttttctgcttaaaccaattattccattttcaag |
508 |
Q |
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| T |
35099069 |
attaacactttagaatttctggtaaatcattccagctacttttttttcccctccttgtatttttttcttttctgcttacaacaattattccattttcaag |
35099168 |
T |
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| Q |
509 |
ttgaaata |
516 |
Q |
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| T |
35099169 |
ttgaaata |
35099176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 514 - 662
Target Start/End: Original strand, 35099208 - 35099356
Alignment:
| Q |
514 |
ataagaaagaaaaggcaagcaaagaattcttgtcgtgctaaaatttgttttgactaaaccagaatttaaatgtagttcttctattaaggactctggttga |
613 |
Q |
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| T |
35099208 |
ataagaaagaaaaggcaagcaaagaattcttttcgtgctaaaatttgttttcactaaaccagaatttaaatggagttcttctattaaggactctggttga |
35099307 |
T |
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| Q |
614 |
taattctactcaacatgaaatgtggtagagtttgcatctcttggcccag |
662 |
Q |
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| T |
35099308 |
taatcctactcaacatgaaatgtggtagagtttgcatctcttggcccag |
35099356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 6e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 514 - 686
Target Start/End: Complemental strand, 6170577 - 6170405
Alignment:
| Q |
514 |
ataagaaagaaaaggcaagcaaagaattcttgtcgtgctaaaatttgttttgactaaaccagaatttaaatgtagttcttctattaaggactctggttga |
613 |
Q |
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| T |
6170577 |
ataagaaagaaaaggcaagcaaagaattcttgtcgtgctaaaatttgttttgactaaaccagaatttaaatggagttcttctattaaggactctggttga |
6170478 |
T |
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| Q |
614 |
taattctactcaacatgaaatgtggtagagtttgcatctcttggcccagnnnnnnngacaactcataaacagc |
686 |
Q |
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| T |
6170477 |
taatcctactcaacatgaaatgtggtagagtttgcatctcttgacccagtttttttgacaactcataaacagc |
6170405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 339 - 513
Target Start/End: Complemental strand, 6170789 - 6170616
Alignment:
| Q |
339 |
gttctaggacggcaacacgtcttctttcattagatttagttgagaaccttgtacctcaacttggaaaacaattaacactttggaatttctggtaaatcat |
438 |
Q |
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| T |
6170789 |
gttctaggacagcaacacgtcttctttcattagatttagttgagaaccttgtacctcaacttggaatacatttaacactttggaatttctggtaaatcat |
6170690 |
T |
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| Q |
439 |
tccagctacnnnnnnnncccctccatgtattttcttcttttctgcttaaaccaattattccattttcaagttgaa |
513 |
Q |
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| T |
6170689 |
tccagctactttcttttcccctccatgtatttt-ttcttttctgcttacaccaattattccattttcaagttgaa |
6170616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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