View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472-Insertion-3 (Length: 666)
Name: NF2472-Insertion-3
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 34159271 - 34159552
Alignment:
| Q |
21 |
caaagtatttaattattatacttgggaagaagaccctttatttatcatgaggcattctagtgatgcacttgagtttgttgctattttcacttgtaagata |
120 |
Q |
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| T |
34159271 |
caaagtatttaattattatacttgggaagaagaccctttatttatcatgaggcattctagtgatgcacttgagtttgttgctattttcacttgtaagata |
34159370 |
T |
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| Q |
121 |
tggttcagtttgctgagtgcagctaaattcgaaatagatgtggctgtctatcagattcgaatgcatccttagataatagggattgtttagtgattatttg |
220 |
Q |
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| T |
34159371 |
tggttcagtttgctgagtgcaactaaattcgaaatagat-------------------gaatgcatccttagataatagggattgtttagtgattatttg |
34159451 |
T |
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| Q |
221 |
atagtttattggtgttgatggcgatggagcacatcaacgttgaagcattcttgatgtagaaaatgaggagatttatggaaatggagtaagaggtatagtc |
320 |
Q |
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| T |
34159452 |
atagtttattggtgttgatggcgatggagcacatcaatgttgaagcattcttgatgtag-aaatgaggagatttatggaaatggagtaggaggtatagtc |
34159550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 491 - 666
Target Start/End: Original strand, 34159800 - 34159975
Alignment:
| Q |
491 |
gtattcacatagttccttcaacccctagacttgcaactcaaagataatgcaaaggtctaaatgtttatctaatgtggctactcaagggttgtctcacttc |
590 |
Q |
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| T |
34159800 |
gtattcacatagttccttcaacccctagacttgcaactcaaagatgatgcaaaggtctaaatgtttatctaatgtgactactcaagggttgtgtcacttc |
34159899 |
T |
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| Q |
591 |
gtgatatgagcttctaaacacacgtctctatcatatcaattgaattgtgtttgatgcatttgttacttttatataa |
666 |
Q |
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| T |
34159900 |
gtgatatgagcttctaaacacatgtttctatcatatcaattgaattatgtttgatgcattcgttacttttatataa |
34159975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 409 - 488
Target Start/End: Original strand, 34159628 - 34159707
Alignment:
| Q |
409 |
ctattgaataattagcttgggccttttaggcgcacaccattacataaaatctagaggttctcagtcattttaataattaa |
488 |
Q |
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| T |
34159628 |
ctatggaataattggcttgggccttttaggcgcataccattacataaaatctagaggttcttagtcattttaatgattaa |
34159707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 373
Target Start/End: Original strand, 34159583 - 34159626
Alignment:
| Q |
330 |
catatcaaattgactcgtggttgttcctattattaggcctagtt |
373 |
Q |
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| T |
34159583 |
catatcaaattgacttgcggttgttcctattattaggcctagtt |
34159626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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