View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2472-Insertion-4 (Length: 624)

Name: NF2472-Insertion-4
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2472-Insertion-4
NF2472-Insertion-4
[»] chr4 (3 HSPs)
chr4 (235-589)||(35184779-35185134)
chr4 (235-373)||(4103951-4104089)
chr4 (249-291)||(47914909-47914951)
[»] chr1 (1 HSPs)
chr1 (435-607)||(1393582-1393755)
[»] chr8 (5 HSPs)
chr8 (235-373)||(15333706-15333844)
chr8 (235-373)||(15514075-15514213)
chr8 (235-373)||(15422802-15422940)
chr8 (235-373)||(18802638-18802776)
chr8 (242-373)||(14980086-14980215)
[»] chr6 (1 HSPs)
chr6 (235-373)||(14963267-14963405)
[»] chr7 (1 HSPs)
chr7 (235-353)||(48630971-48631089)
[»] chr5 (1 HSPs)
chr5 (235-373)||(21301313-21301445)
[»] scaffold0464 (1 HSPs)
scaffold0464 (232-373)||(3344-3485)
[»] chr2 (1 HSPs)
chr2 (542-623)||(41460182-41460266)
[»] scaffold0232 (2 HSPs)
scaffold0232 (249-291)||(21266-21308)
scaffold0232 (249-291)||(26349-26391)
[»] chr3 (1 HSPs)
chr3 (249-291)||(7190697-7190739)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 235 - 589
Target Start/End: Original strand, 35184779 - 35185134
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||| ||||||||||||||||||||| || |||||| ||    
T  35184779 tgcaagctgagattgattctcttaaggataaggcttcacaagttgatattttgaaggcgcaagttgctttcttaatgcaaatgcaagagcaaaattcgag 35184878  T
Q  335 agacaaagaggtaaattttacaaaactattgctaaaacaatatgctcttttacnnnnnnnnnnttagaggttgatatctgcaacaatccttaggcttttc 434  Q
    |||||||||||||| ||||||||||||||||| |||||| | ||||||| |||          ||||| ||||||||||||||||| |||||||||||||    
T  35184879 agacaaagaggtaacttttacaaaactattgcaaaaacattctgctcttgtacaaaaaaaaa-ttagaagttgatatctgcaacaacccttaggcttttc 35184977  T
Q  435 tttgtatgttgtagctttgcgaaattaagtacatgatttggataatagagactcatagttttacattcatttaccatctgaaata--tgtgttttcctat 532  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||| |||||||||||||  ||||||||||||||||||||  |||||||||||||    
T  35184978 tttgtatgttgttgctttgcgaaattaagtgtatgatttggataatagatactcatagttttatgttcatttaccatctgaaatatgtgtgttttcctat 35185077  T
Q  533 ttgttgaacgtagccaggcgtgtacttttgtataactgctatgatcggctcattttt 589  Q
    |||||||| ||||||||| ||||| ||||||||||||||||| |  |||||||||||    
T  35185078 ttgttgaaggtagccaggtgtgtaattttgtataactgctattactggctcattttt 35185134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 4103951 - 4104089
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||| | | ||||| |||| ||||||||||||||||||| |||||||||    
T  4103951 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 4104050  T
Q  335 agacaaagaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  4104051 agacaaagaggtaacttttaccaaactattgcaaaaaca 4104089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 47914909 - 47914951
Alignment:
Q  249 gattctcttaaggataaggcttcacaggttgatatcttgaagg 291  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  47914909 gattcacttaaggataaggcttcacaagttgatatcttgaagg 47914951  T

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Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 435 - 607
Target Start/End: Original strand, 1393582 - 1393755
Alignment:
Q  435 tttgtatgttgtagctttgcgaaattaagtacatgatttggataatagagactcatagttttacattcatttaccatctgaaata--tgtgttttcctat 532  Q
    |||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||| ||  ||||||| |||||||||||  |||||||||||||    
T  1393582 tttgtatgttgttgctttgtgaaattgagtatatgatttggataatagagactcatagtttcacgatcatttagcatctgaaatatgtgtgttttcctat 1393681  T
Q  533 ttgttgaacgtagccaggcgtgtacttttgtataactgctatgatcggctcattttttgttatagtttatatttg 607  Q
    |||||||| |||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||| | ||||||    
T  1393682 ttgttgaatgtagccagacgtgtacttttgtataactgctatgactggctca-tttttgttatagtctgtatttg 1393755  T

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Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 15333706 - 15333844
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||||| | ||||| |||| ||||||||||||||||||| |||||||||    
T  15333706 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 15333805  T
Q  335 agacaaagaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  15333806 agacaaagaggtaacttttaccaaactattgcaaaaaca 15333844  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 15514075 - 15514213
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||||| | ||||| |||| ||||||||||||||||||| |||||||||    
T  15514075 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 15514174  T
Q  335 agacaaagaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  15514175 agacaaagaggtaacttttaccaaactattgcaaaaaca 15514213  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 15422802 - 15422940
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||   ||||| |||| ||||||||||||||||||| |||||||||    
T  15422802 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcacaagttgcttttttaatgcaaatgcaagtgcaaaattctag 15422901  T
Q  335 agacaaagaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  15422902 agacaaagaggtaacttttaccaaactattgcaaaaaca 15422940  T

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Target: chr8; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 18802638 - 18802776
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||| | | ||||| |||| ||||||||||||||||||| |||||||||    
T  18802638 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 18802737  T
Q  335 agacaaagaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||||||||||| | |||| |||||||||| ||||||    
T  18802738 agacaaagaggtaactcttaccaaactattgcaaaaaca 18802776  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 242 - 373
Target Start/End: Complemental strand, 14980215 - 14980086
Alignment:
Q  242 tgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctagagacaaa 341  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| | | ||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  14980215 tgagattgattctcttaaggagaaggcttcacaagttgatttcttgaacgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctagagacaaa 14980116  T
Q  342 gaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||  | ||||| |||||||||| ||||||    
T  14980115 gaggt--actttaccaaactattgcaaaaaca 14980086  T

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Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 14963267 - 14963405
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||| | | ||||| |||| ||||||||||||||||||| |||||||||    
T  14963267 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 14963366  T
Q  335 agacaaagaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  14963367 agacaaagaggtaacttttaccaaactattgcaaaaaca 14963405  T

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Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 48630971 - 48631089
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||| | | ||||| |||| |||||||||||||||| || |||||||||    
T  48630971 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaacgcgcaagttgcttttttaatgcaaatgcaagcgcaaaattctag 48631070  T
Q  335 agacaaagaggtaaatttt 353  Q
    |||||||||||||| ||||    
T  48631071 agacaaagaggtaactttt 48631089  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 21301445 - 21301313
Alignment:
Q  235 tgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 334  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||||| | ||||| |||| ||      ||||||||||| |||||| ||    
T  21301445 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgctttttt------aatgcaagtgcaaaattcaag 21301352  T
Q  335 agacaaagaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  21301351 agacaaagaggtaacttttaccaaactattgcaaaaaca 21301313  T

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Target: scaffold0464 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 3344 - 3485
Alignment:
Q  232 atgtgcaagttgagattgattctcttaaggataaggcttcacaggttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattc 331  Q
    ||||||||| || |||||||||||||| ||| ||||||||  | |||||| ||||||||| | ||||| |||| |||||||||||| ||| || ||||||    
T  3344 atgtgcaagctgggattgattctcttagggagaaggcttccgaagttgatgtcttgaaggcgcaagttgctttattaatgcaaatgtaagcgcaaaattc 3443  T
Q  332 tagagacaaagaggtaaattttacaaaactattgctaaaaca 373  Q
    |||||||| || ||||| |||||| |||||||| | ||||||    
T  3444 tagagacagagtggtaatttttaccaaactatttcaaaaaca 3485  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 542 - 623
Target Start/End: Original strand, 41460182 - 41460266
Alignment:
Q  542 gtagccaggcgtgtacttttgtataactgct----atgatcggctcattttttgttatagtttatatttgggtggtgtggtttctc 623  Q
    ||||| |||||||||||||||||||||||||    ||||| |||||| ||||||| ||||| | |||| |||||||||||||||||    
T  41460182 gtagcgaggcgtgtacttttgtataactgctatgaatgattggctca-tttttgtcatagtctgtattggggtggtgtggtttctc 41460266  T

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Target: scaffold0232 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 21266 - 21308
Alignment:
Q  249 gattctcttaaggataaggcttcacaggttgatatcttgaagg 291  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  21266 gattcacttaaggataaggcttcacaagttgatatcttgaagg 21308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 26349 - 26391
Alignment:
Q  249 gattctcttaaggataaggcttcacaggttgatatcttgaagg 291  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  26349 gattcacttaaggataaggcttcacaagttgatatcttgaagg 26391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 7190697 - 7190739
Alignment:
Q  249 gattctcttaaggataaggcttcacaggttgatatcttgaagg 291  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  7190697 gattcacttaaggataaggcttcacaagttgatatcttgaagg 7190739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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