View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2472-Insertion-6 (Length: 405)

Name: NF2472-Insertion-6
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2472-Insertion-6
NF2472-Insertion-6
[»] chr8 (6 HSPs)
chr8 (9-405)||(7035373-7035769)
chr8 (68-385)||(7028691-7029008)
chr8 (82-385)||(7078234-7078537)
chr8 (82-385)||(7021088-7021391)
chr8 (285-366)||(7086979-7087060)
chr8 (308-385)||(7069936-7070013)
[»] chr4 (8 HSPs)
chr4 (288-367)||(3821534-3821613)
chr4 (288-385)||(4003270-4003367)
chr4 (288-367)||(3811961-3812040)
chr4 (285-385)||(3953038-3953138)
chr4 (285-385)||(4220769-4220869)
chr4 (288-366)||(3988159-3988237)
chr4 (290-373)||(3916008-3916091)
chr4 (288-367)||(4011749-4011828)
[»] chr5 (1 HSPs)
chr5 (288-373)||(13399111-13399196)
[»] scaffold0070 (1 HSPs)
scaffold0070 (290-343)||(19738-19791)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 7035769 - 7035373
Alignment:
Q  9 taatttacatctgtagtacttctacctctcttgaattttctttagactagttacctatcaaaatttatttgtgaaagaacacttacggaaaatgtgatga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7035769 taatttacatctgtagtacttctacctctcttgaattttctttagactagttacctatcaaaatttatttgtgaaagaacacttacggaaaatgtgatga 7035670  T
Q  109 atcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttattcaaattatacnnnnnnncatgttgagcaaaagcatctcta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  7035669 atcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttattcaaattatacttttgttcatgttgagcaaaagcatctcta 7035570  T
Q  209 taactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcattagaaccctaccaaaatttgctctgcactcgactattttcacaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||||||||||    
T  7035569 taactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcaatagaatcctgccataatttgctctgcactcgactattttcacaa 7035470  T
Q  309 gctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgctgtatgaagttctgatatttc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7035469 gctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatcaatgatttttcaattgctgtatgaagttctgatatttc 7035373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 68 - 385
Target Start/End: Complemental strand, 7029008 - 7028691
Alignment:
Q  68 aaaatttatttgtgaaagaacacttacggaaaatgtgatgaatcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttat 167  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |    
T  7029008 aaaatttatttgtgaaaggacacttacgaaaaaagtgatgaatcaaatccagacatattagcagattgcttcaaagcagatctccagcttagcaccttgt 7028909  T
Q  168 tcaaattatacnnnnnnncatgttgagcaaaagcatctctataactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcattag 267  Q
       || |||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  7028908 aggaactatacttttgttcatgttgagcaaaagcatctctataagtcccattttgatgccgtacatctgagggatatacttggtagaaaactggcattag 7028809  T
Q  268 aaccctaccaaaatttgctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatg 367  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  7028808 aaccctaccataatttgctctgcactcgactattttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaatc 7028709  T
Q  368 aatgatttttcaattgct 385  Q
    ||||||||||||||||||    
T  7028708 aatgatttttcaattgct 7028691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 82 - 385
Target Start/End: Original strand, 7078234 - 7078537
Alignment:
Q  82 aaagaacacttacggaaaatgtgatgaatcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttattcaaattatacnnn 181  Q
    |||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||| ||||| |   || ||||        
T  7078234 aaagaacacttacgaaaattgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccaccttagaaccttgtaagaactataattt 7078333  T
Q  182 nnnncatgttgagcaaaagcatctctataactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcattagaaccctaccaaaat 281  Q
        |||||||||||||||||||||||||| |||||||||| | || |||| ||| |||||||||||||||||||||||||||||||| ||||||| | |    
T  7078334 tgttcatgttgagcaaaagcatctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatt 7078433  T
Q  282 ttgctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaat 381  Q
    || |||| ||||| ||||||||||||||||| |||| |||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  7078434 tttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaatgaaatgaatgatttttcaat 7078533  T
Q  382 tgct 385  Q
    ||||    
T  7078534 tgct 7078537  T

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Target: chr8; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 82 - 385
Target Start/End: Complemental strand, 7021391 - 7021088
Alignment:
Q  82 aaagaacacttacggaaaatgtgatgaatcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttattcaaattatacnnn 181  Q
    |||||| |||||||||||||||  ||||| ||||||||| |||||||||||||   ||||||||| ||||||  ||  |||||| |   || || |        
T  7021391 aaagaagacttacggaaaatgtattgaatgaaatccagaaatattggcagattttgtcaaagcatgtctccacttttccaccttgtcggaactaaaattt 7021292  T
Q  182 nnnncatgttgagcaaaagcatctctataactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcattagaaccctaccaaaat 281  Q
        || ||||| ||||||||||| |||||   ||| ||||||| ||||| ||||  || |||||||||||||||||||||| ||||| |||| || | |    
T  7021291 tgtccaagttgaacaaaagcatctttataagcaccagtttgatgtcgtacttctgtaggatctacttggtagaaaactggcaatagaatcctatcatatt 7021192  T
Q  282 ttgctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaat 381  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||   ||||||||||||||||||    
T  7021191 ttgctctgcaatcaactattttcacaagctcatccaaacaccaatgtgaatatgaaaagtttggagagaatatgaccaaatgaatgaatgatttttcaat 7021092  T
Q  382 tgct 385  Q
    ||||    
T  7021091 tgct 7021088  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 7086979 - 7087060
Alignment:
Q  285 ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaat 366  Q
    |||| ||||| || ||||| |||||||||||||||||||| | |||||| ||| ||||| | || |||||||| ||||||||    
T  7086979 ctctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatatgactaatgaaat 7087060  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 385
Target Start/End: Original strand, 7069936 - 7070013
Alignment:
Q  308 agctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgct 385  Q
    ||||||||||||||||||  |||||| ||| ||||| | || |||||||| ||||||||  | ||| |||||||||||    
T  7069936 agctcatccaaacaccaagatgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaattgct 7070013  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 3821534 - 3821613
Alignment:
Q  288 tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatg 367  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||  ||| ||||||||||||||||||    
T  3821534 tgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgagaatatgaccaatgaaatg 3821613  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 4003270 - 4003367
Alignment:
Q  288 tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgct 385  Q
    ||||||| | |||||||||||| || || ||||||||||||||||| ||| |||||  ||| ||||||||||||||||||||||||  ||||||||||    
T  4003270 tgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatgaatgatccttcaattgct 4003367  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 3811961 - 3812040
Alignment:
Q  288 tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatg 367  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||| ||| |||||  ||| ||||||||||||||||||    
T  3811961 tgcactcaattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatg 3812040  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 3953138 - 3953038
Alignment:
Q  285 ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgc 384  Q
    |||||||||| | |||||||||||| || || ||||||||| ||||||| ||| |||||  ||| ||||||| |||||||||||| |||  |||||||||    
T  3953138 ctctgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgagaatatgatcaatgaaatgaacgatccttcaattgc 3953039  T
Q  385 t 385  Q
    |    
T  3953038 t 3953038  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 4220769 - 4220869
Alignment:
Q  285 ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgatttttcaattgc 384  Q
    |||||||||| | |||||| ||||| || || ||||||||||||||||| ||| |||||   || |||||||||||||||||| |||||  |||||||||    
T  4220769 ctctgcactcaattatttttacaagttcttctaaacaccaatgtgaagaagcatagttttcagagaatatgaccaatgaaatggatgatccttcaattgc 4220868  T
Q  385 t 385  Q
    |    
T  4220869 t 4220869  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 3988159 - 3988237
Alignment:
Q  288 tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaat 366  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||| | | | |||  ||| |||||||||||||||||    
T  3988159 tgcactcgattattttcacaagttcatctaaacaccaatgtgaagaagaataattttttgagaatatgaccaatgaaat 3988237  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 3916091 - 3916008
Alignment:
Q  290 cactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgat 373  Q
    ||||| |||||||||||||| || |  ||||||||||||||| | ||| |||||  ||| ||||||| ||||||||||||||||    
T  3916091 cactcaactattttcacaagttcttttaaacaccaatgtgaacaagcatagttttctgagaatatgatcaatgaaatgaatgat 3916008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 4011749 - 4011828
Alignment:
Q  288 tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatg 367  Q
    ||||||| | ||||||| |||| || || ||||||||||||||| | ||| |||||  ||| ||||||||||||||||||    
T  4011749 tgcactcaattattttcgcaagttcttctaaacaccaatgtgaacaagcatagttttatgagaatatgaccaatgaaatg 4011828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 373
Target Start/End: Original strand, 13399111 - 13399196
Alignment:
Q  288 tgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatgaatgat 373  Q
    ||||||| | |||||||||||| || || ||||||||| ||||||| ||| |||||  ||| ||||||| ||||||||| ||||||    
T  13399111 tgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgagaatatgatcaatgaaataaatgat 13399196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 19738 - 19791
Alignment:
Q  290 cactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagttt 343  Q
    |||||||||||||||||||  |||||||||||||| | ||||| |||| |||||    
T  19738 cactcgactattttcacaacttcatccaaacaccattttgaagttgcatagttt 19791  T

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