View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472-Insertion-9 (Length: 138)
Name: NF2472-Insertion-9
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472-Insertion-9 |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 6e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 30670983 - 30671113
Alignment:
| Q |
8 |
gaagcaactttctcaattggatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcctagcattgacagaactttggttggga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30670983 |
gaagcaactttctcaattggatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcatagcattgacagaactttggttggga |
30671082 |
T |
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| Q |
108 |
ggaaacttcttccatggagctatacctttgt |
138 |
Q |
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| T |
30671083 |
ggaaacttcttccatggagctatacctttgt |
30671113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 30634574 - 30634704
Alignment:
| Q |
8 |
gaagcaactttctcaattggatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcctagcattgacagaactttggttggga |
107 |
Q |
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| T |
30634574 |
gaagcaactttctcaattgaatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcatagcattgacagaactttggttggga |
30634673 |
T |
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| Q |
108 |
ggaaacttcttccatggagctatacctttgt |
138 |
Q |
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| T |
30634674 |
ggaaacttcttccatggagctatacctttgt |
30634704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 30662303 - 30662433
Alignment:
| Q |
8 |
gaagcaactttctcaattggatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcctagcattgacagaactttggttggga |
107 |
Q |
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| T |
30662303 |
gaagcaactttctcaattgaatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcatagcattgacagaactttggttggga |
30662402 |
T |
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| Q |
108 |
ggaaacttcttccatggagctatacctttgt |
138 |
Q |
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| T |
30662403 |
ggaaacttcttccatggagctatacctttgt |
30662433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 4e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 35405873 - 35406003
Alignment:
| Q |
8 |
gaagcaactttctcaattggatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcctagcattgacagaactttggttggga |
107 |
Q |
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||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
35405873 |
gaagcaactttctcatttgaatctaagtttgaataagttgtcaggtgaaattccaaaggatttagcttcttgcctagaattgacaaaacttgagttgggg |
35405972 |
T |
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| Q |
108 |
ggaaacttcttccatggagctatacctttgt |
138 |
Q |
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| T |
35405973 |
agaaacttcttccatggagctatacctttgt |
35406003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 35375691 - 35375817
Alignment:
| Q |
12 |
caactttctcaattggatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcctagcattgacagaactttggttgggaggaa |
111 |
Q |
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|||||||| |||||| ||||| |||| ||||||||||||||||||||||||| ||| ||||||||||| | |||||||||| |||| | ||||| |||| |
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| T |
35375691 |
caactttcacaattgtatctaggcttaaataagttgtctggtgaaattcctagggaactagcttcttgcttggcattgacagtacttggattggggggaa |
35375790 |
T |
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| Q |
112 |
acttcttccatggagctatacctttgt |
138 |
Q |
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| T |
35375791 |
acttctttcatggaagtatacctttgt |
35375817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 4e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 10416596 - 10416466
Alignment:
| Q |
8 |
gaagcaactttctcaattggatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcctagcattgacagaactttggttggga |
107 |
Q |
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|||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
10416596 |
gaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaactttggttgggg |
10416497 |
T |
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| Q |
108 |
ggaaacttcttccatggagctatacctttgt |
138 |
Q |
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| T |
10416496 |
gaaaacttctttcatggagctatacctttgt |
10416466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 10410863 - 10410753
Alignment:
| Q |
28 |
atctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcctagcattgacagaactttggttgggaggaaacttcttccatggagc |
127 |
Q |
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|||||| ||||||||| ||||| |||||||||||||| ||||||| |||||||||| ||||||||||| ||| |||| |||||||||| | ||||| |
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| T |
10410863 |
atctaaacttgaataaattgtcaggtgaaattcctaaatatttagcctcttgcctagatttgacagaactatggctgggtataaacttcttctacggagc |
10410764 |
T |
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| Q |
128 |
tatacctttgt |
138 |
Q |
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||||||||||| |
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| T |
10410763 |
tatacctttgt |
10410753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 29624000 - 29623903
Alignment:
| Q |
38 |
gaataagttgtctggtgaaattcctaaggatttagcttcttgcctagcattgacagaactttggttgggaggaaacttcttccatggagctatacctt |
135 |
Q |
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||||||||| |||||||||||||| ||| || ||||||||||| || |||||||||||||| ||||||| |||||||||| |||||| |||||||| |
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| T |
29624000 |
gaataagttttctggtgaaattcccaagaatctagcttcttgcttatcattgacagaacttaggttggggagaaacttcttgcatggaagtatacctt |
29623903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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