View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472R-Insertion-4 (Length: 590)
Name: NF2472R-Insertion-4
Description: NF2472R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 30225922 - 30225778
Alignment:
| Q |
65 |
atcatgtgaacaaaagtaaatagtttttg-tttatatatagagcagaattttcttacaaaaatttgctatcttattttacataagaaagcaccctagatt |
163 |
Q |
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| T |
30225922 |
atcatgtgaatgaaagtaaattgtttctggtttatatatagagcagaattttctgacaaaaagttgctatcttattttacataagaaagcaccctaaatt |
30225823 |
T |
|
| Q |
164 |
ggcatattgaagtttcaaccaaaggaagaactgtgcagcacaatc |
208 |
Q |
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| T |
30225822 |
ggctgatcgaagtttcaaccaaaggcagaattgtgcagcacaatc |
30225778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 17419842 - 17419751
Alignment:
| Q |
64 |
aatcatgtgaacaaaagtaaatagtttttg-tttatatatagagcagaattttcttacaaaaatttgctatcttattttacataagaaagca |
154 |
Q |
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| T |
17419842 |
aatcatgtgaacgaaagtaaattgtttctggtttatacatagagcagaattttctggcaaaaagttgctatattattttacataagaaagca |
17419751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 30247638 - 30247564
Alignment:
| Q |
65 |
atcatgtgaacaaaagtaaatagtttt-tgtttatatatagagcagaattttcttacaaaaatttgctatcttat |
138 |
Q |
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| T |
30247638 |
atcatgtgaatgaaagtaaattgtttcatgttaatatatagagcagaattttctgacaaaaagttgctatcttat |
30247564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 17419696 - 17419641
Alignment:
| Q |
204 |
caatcaactaatggggaaaatcaacaattataagaacttccattgcagagccttac |
259 |
Q |
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| T |
17419696 |
caatcaactaatgggggaaatcagcaatcataataacttccactgcagagccttac |
17419641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 30226004 - 30225953
Alignment:
| Q |
18 |
tcaatacaaattctagtaaacccaaatacataaatggctaactaacaatcat |
69 |
Q |
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| T |
30226004 |
tcaatacaaattctagtaaacccgaataaataaatggttaattaacaatcat |
30225953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 5994381 - 5994424
Alignment:
| Q |
18 |
tcaatacaaattctagtaaacccaaatacataaatggctaacta |
61 |
Q |
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| T |
5994381 |
tcaatacaaattctagtaaacccaaataaataaatggctaacta |
5994424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 499
Target Start/End: Complemental strand, 15726069 - 15725972
Alignment:
| Q |
399 |
tctgccagcatggataaagttagttagccacctatgtacagctgacaccggcagttactagggtgtaagttaactcactattgattgtaggttaagcttt |
498 |
Q |
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| T |
15726069 |
tctgccagtgtggttaaagttagttagccacctctgtccagctggcactgaca---actagggtgtaggttaactcaatagtgactgtaggttaagcttt |
15725973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 26705392 - 26705447
Alignment:
| Q |
204 |
caatcaactaatggggaaaatcaacaattataagaacttccattgcagagccttac |
259 |
Q |
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| T |
26705392 |
caatcaactaatgggggaaatcagcaatcataagaacttccattgtagagcattac |
26705447 |
T |
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