View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472R-Insertion-5 (Length: 408)
Name: NF2472R-Insertion-5
Description: NF2472R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472R-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 42741631 - 42741923
Alignment:
| Q |
9 |
caccaaatgagacattaattgtcacttactgattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaagg |
108 |
Q |
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| T |
42741631 |
caccaaatgagacattaattgtcacttactgattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaagg |
42741730 |
T |
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| Q |
109 |
taccatgaatttcctt-aacttcattacttccacatgctagcaacattgtttcaaaacttctcatcattttcttctgcatagttagtctcctccccaagc |
207 |
Q |
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| T |
42741731 |
taccatgaatttcctttaacttcattacttccacatgctagcaacattgtttcaaaacttctcatcattttcttctgcatagttagtctcctccccaagc |
42741830 |
T |
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| Q |
208 |
ctattcttgtcaaacctaacttctaataattgtagctttgagtgttagatttggcataccttgaggttgagtatccttttccacgtcttgtta |
300 |
Q |
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| T |
42741831 |
ctattcttgtcaaacctaacttctaataattgtagctttgagtgttagatttggcataccttgaggttgagtatccttttccacgtcatgtta |
42741923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 21745768 - 21745918
Alignment:
| Q |
26 |
attgtcacttactgattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctta |
125 |
Q |
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| T |
21745768 |
attgtcacttactgattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctta |
21745867 |
T |
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| Q |
126 |
acttcattacttccacatgctagcaacattgtttcaaaacttctcatcatt |
176 |
Q |
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| T |
21745868 |
acttcattacttccacatgctagcaacattgtttcaaaacttctcatcatt |
21745918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 4890685 - 4890721
Alignment:
| Q |
127 |
cttcattacttccacatgctagcaacattgtttcaaa |
163 |
Q |
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| T |
4890685 |
cttcattacttccacgtgctagcagcattgtttcaaa |
4890721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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