View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472R-Insertion-8 (Length: 173)
Name: NF2472R-Insertion-8
Description: NF2472R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472R-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 48949336 - 48949170
Alignment:
| Q |
8 |
aaaaaggggggacattgtttattttatgcttaggggtgagaaacaccatgcatcaatttatttagtggttgtttggttctatggtgggagcacaaatatc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
48949336 |
aaaaaggggggacattgtttattttatgcttaggggtgagaaacatcatgcatcaatttatttagtggttgtttggttctacggtggaagcataaatatc |
48949237 |
T |
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| Q |
108 |
acatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggctttgggcagaacgtgcg |
173 |
Q |
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| T |
48949236 |
acatcccaatgctcaactaccgtgatttttaagaagctcaaaatagtggctttgggcagaacgtgcg |
48949170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 15247940 - 15248042
Alignment:
| Q |
72 |
gtggttgtttggttctatggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggctttgggcagaacgt |
170 |
Q |
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| T |
15247940 |
gtggctgtttggtttggtggtgggagcacaaatatcaggtcccaatgctccaccaccgtgatttttatgaagcttaaaattgtggctttaggcaaaacgt |
15248039 |
T |
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| Q |
171 |
gcg |
173 |
Q |
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||| |
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| T |
15248040 |
gcg |
15248042 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 28024439 - 28024336
Alignment:
| Q |
71 |
agtggttgtttggttctatggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggctttgggcagaacg |
169 |
Q |
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||||| ||||||||| ||||||||||||||||||| | ||||||||||| ||| || ||||||||| |||||| ||||| |||| ||| ||| |||| |
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| T |
28024439 |
agtggctgtttggtttggtggtgggagcacaaatatcgcgtcccaatgctccactgccgtgatttttatgaagcttaaaattgtggatttttgcaaaacg |
28024340 |
T |
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| Q |
170 |
tgcg |
173 |
Q |
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|||| |
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| T |
28024339 |
tgcg |
28024336 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 503808 - 503721
Alignment:
| Q |
67 |
atttagtggttgtttggttctatggtgggagcacaaatatcacatcccaatgctcaactac-ctgatttttaagaagctcaaaatagt |
153 |
Q |
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| T |
503808 |
atttcgtgattgtttggtttggtggtgggaacaaaaatatcgcgtcccaatgctcaaccactgtgatttttatgaagctcaaaatagt |
503721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 32274531 - 32274445
Alignment:
| Q |
68 |
tttagtggttgtttggttctatggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagt |
153 |
Q |
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|||||||||||||||||| | |||| | || ||||||||| |||||||||||||||||| || |||||| ||| ||| ||||||| |
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| T |
32274531 |
tttagtggttgtttggtttggtcgtggaaacaaaaatatcacgtcccaatgctcaactaccgtggtttttatgaaactcgaaatagt |
32274445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 34785091 - 34785019
Alignment:
| Q |
88 |
atggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggcttt |
159 |
Q |
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|||||||||||| ||||| ||| |||||||||| | ||||| |||||||| ||||||| ||||| || ||||| |
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| T |
34785091 |
atggtgggagcataaataccacttcccaatgctaatctaccgtgatttttgagaagcttaaaattgtagcttt |
34785019 |
T |
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