View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472_low_1 (Length: 621)
Name: NF2472_low_1
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 404 - 547
Target Start/End: Original strand, 30225778 - 30225922
Alignment:
| Q |
404 |
gattgtgctgcacagttcttcctttggttgaaacttcaatatgccaatctagggtgctttcttatgtaaaataagatagcaaatttttgtaagaaaattc |
503 |
Q |
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| T |
30225778 |
gattgtgctgcacaattctgcctttggttgaaacttcgatcagccaatttagggtgctttcttatgtaaaataagatagcaactttttgtcagaaaattc |
30225877 |
T |
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| Q |
504 |
tgctctatatataaa-caaaaactatttacttttgttcacatgat |
547 |
Q |
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| T |
30225878 |
tgctctatatataaaccagaaacaatttactttcattcacatgat |
30225922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 17419751 - 17419842
Alignment:
| Q |
458 |
tgctttcttatgtaaaataagatagcaaatttttgtaagaaaattctgctctatatataaa-caaaaactatttacttttgttcacatgatt |
548 |
Q |
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| T |
17419751 |
tgctttcttatgtaaaataatatagcaactttttgccagaaaattctgctctatgtataaaccagaaacaatttactttcgttcacatgatt |
17419842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 474 - 547
Target Start/End: Original strand, 30247564 - 30247638
Alignment:
| Q |
474 |
ataagatagcaaatttttgtaagaaaattctgctctatatataaaca-aaaactatttacttttgttcacatgat |
547 |
Q |
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| T |
30247564 |
ataagatagcaactttttgtcagaaaattctgctctatatattaacatgaaacaatttactttcattcacatgat |
30247638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 17419641 - 17419696
Alignment:
| Q |
353 |
gtaaggctctgcaatggaagttcttataattgttgattttccccattagttgattg |
408 |
Q |
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| T |
17419641 |
gtaaggctctgcagtggaagttattatgattgctgatttcccccattagttgattg |
17419696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 594
Target Start/End: Original strand, 30225953 - 30226004
Alignment:
| Q |
543 |
atgattgttagttagccatttatgtatttgggtttactagaatttgtattga |
594 |
Q |
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| T |
30225953 |
atgattgttaattaaccatttatttattcgggtttactagaatttgtattga |
30226004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 594
Target Start/End: Complemental strand, 5994424 - 5994381
Alignment:
| Q |
551 |
tagttagccatttatgtatttgggtttactagaatttgtattga |
594 |
Q |
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| T |
5994424 |
tagttagccatttatttatttgggtttactagaatttgtattga |
5994381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 15725972 - 15726069
Alignment:
| Q |
113 |
gaaagcttaacctacaatcaatagtgagttaacttacaccctagtaactgccggtgtcagctgtacataggtggctaactaactttatccatgctggcag |
212 |
Q |
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| T |
15725972 |
gaaagcttaacctacagtcactattgagttaacctacaccctagt---tgtcagtgccagctggacagaggtggctaactaactttaaccacactggcag |
15726068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 26705447 - 26705392
Alignment:
| Q |
353 |
gtaaggctctgcaatggaagttcttataattgttgattttccccattagttgattg |
408 |
Q |
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| T |
26705447 |
gtaatgctctacaatggaagttcttatgattgctgatttcccccattagttgattg |
26705392 |
T |
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