View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2472_low_2 (Length: 326)
Name: NF2472_low_2
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 32160964 - 32161256
Alignment:
| Q |
15 |
caaaggtatttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaagg |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
32160964 |
caaaggtatttccatcttatgttctggataaattgcagaagctggagacggtgatagtaactgattgtcctgctctgaaagttgtatttgaaacacaaag |
32161063 |
T |
|
| Q |
115 |
tctacaagcagatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaat |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
32161064 |
tctacaagcagatggaggtatgcatataaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggcat-ggaat |
32161162 |
T |
|
| Q |
215 |
cctaatgaaagcatcaagttccgaaacatcagcctattgggagttgttgaatgcaaagcccttaattatgttcttcccctctccatgtacatct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32161163 |
cctaatgaaagcatcaagttccgaaacatctgcctattgggagttattgaatgcaaagcccttaattatgttcttcccctctccacgtacatct |
32161256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 30036752 - 30036479
Alignment:
| Q |
24 |
ttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaaggtctacaagc |
123 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||||||| | ||| |||||| ||||||||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
30036752 |
ttccatctaatgttcttgataaattacagaagctggagacaatgactgtaacagattgtcctaatctggaagttgtgttcgaaacacaaggtctaaaagc |
30036653 |
T |
|
| Q |
124 |
agatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaatgaa |
223 |
Q |
| |
|
|||||| |||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
30036652 |
agatggtggtagacagataaggctggatatgcaattgaaaactctcactttgaaaaatttaccgatgttaaaacacatatggagtgggaatcctaatgaa |
30036553 |
T |
|
| Q |
224 |
agcatcaagttccgaaacatcagcctattgggagttgttgaatgcaaagcccttaattatgttcttcccctctc |
297 |
Q |
| |
|
||| ||||||| | ||||||| ||||||| |||| ||||||| ||| |||||||| |||| ||||| ||||| |
|
|
| T |
30036552 |
agcttcaagtttcaaaacatcttcctattgaaagttattgaatgtaaaacccttaatcatgtccttcctctctc |
30036479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 30230890 - 30230617
Alignment:
| Q |
24 |
ttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaaggtctacaagc |
123 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||||||| | ||| |||||| ||||||||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
30230890 |
ttccatctaatgttcttgataaattacagaagctggagacaatgactgtaacagattgtcctaatctggaagttgtgttcgaaacacaaggtctaaaagc |
30230791 |
T |
|
| Q |
124 |
agatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaatgaa |
223 |
Q |
| |
|
|||||| |||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
30230790 |
agatggtggtagacagataaggctggatatgcaattgaaaactctcactttgaaaaatttaccgatgttaaaacacatatggagtgggaatcctaatgaa |
30230691 |
T |
|
| Q |
224 |
agcatcaagttccgaaacatcagcctattgggagttgttgaatgcaaagcccttaattatgttcttcccctctc |
297 |
Q |
| |
|
||| ||||||| | ||||||| ||||||| |||| ||||||| ||| |||||||| |||| ||||| ||||| |
|
|
| T |
30230690 |
agcttcaagtttcaaaacatcttcctattgaaagttattgaatgtaaaacccttaatcatgtccttcctctctc |
30230617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 30023945 - 30024218
Alignment:
| Q |
24 |
ttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaaggtctacaagc |
123 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||||||| | ||| |||||| ||||||||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
30023945 |
ttccatctaatgttcttgataaattacagaagctggagacaatgactgtaacagattgtcctaatctggaagttgtgttcgaaacacaaggtctaaaagc |
30024044 |
T |
|
| Q |
124 |
agatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaatgaa |
223 |
Q |
| |
|
|||||| |||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
30024045 |
agatggtggtagacagataaggctggatatgcaattgaaaactctcactttgaaaaatttaccgatgttaaaacacatatggagtgggaatcctaatgaa |
30024144 |
T |
|
| Q |
224 |
agcatcaagttccgaaacatcagcctattgggagttgttgaatgcaaagcccttaattatgttcttcccctctc |
297 |
Q |
| |
|
||| ||||||| | ||||||| || |||| |||| ||||||| ||| |||||||| |||| ||||| ||||| |
|
|
| T |
30024145 |
agcttcaagtttcaaaacatcttccaattgaaagttattgaatgtaaaacccttaatcatgtccttcctctctc |
30024218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 30118177 - 30117904
Alignment:
| Q |
24 |
ttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaaggtctacaagc |
123 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||||||| | ||| |||||| ||||||||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
30118177 |
ttccatctaatgttcttgataaattacagaagctggagacaatgactgtaacagattgtcctaatctggaagttgtgttcgaaacacaaggtctaaaagc |
30118078 |
T |
|
| Q |
124 |
agatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaatgaa |
223 |
Q |
| |
|
|||||| |||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
30118077 |
agatggtggtagacagataaggctggatatgcaattgaaaactctcactttgaaaaatttaccgatgttaaaacacatatggagtgggaatcctaatgaa |
30117978 |
T |
|
| Q |
224 |
agcatcaagttccgaaacatcagcctattgggagttgttgaatgcaaagcccttaattatgttcttcccctctc |
297 |
Q |
| |
|
||| ||||||| | ||||||| || |||| |||| ||||||| ||| |||||||| |||| ||||| ||||| |
|
|
| T |
30117977 |
agcttcaagtttcaaaacatcttccaattgaaagttattgaatgtaaaacccttaatcatgtccttcctctctc |
30117904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 30132934 - 30132661
Alignment:
| Q |
24 |
ttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaaggtctacaagc |
123 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||||||| | ||| |||||| ||||||||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
30132934 |
ttccatctaatgttcttgataaattacagaagctggagacaatgactgtaacagattgtcctaatctggaagttgtgttcgaaacacaaggtctaaaagc |
30132835 |
T |
|
| Q |
124 |
agatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaatgaa |
223 |
Q |
| |
|
|||||| |||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
30132834 |
agatggtggtagacagataaggctggatatgcaattgaaaactctcactttgaaaaatttaccgatgttaaaacacatatggagtgggaatcctaatgaa |
30132735 |
T |
|
| Q |
224 |
agcatcaagttccgaaacatcagcctattgggagttgttgaatgcaaagcccttaattatgttcttcccctctc |
297 |
Q |
| |
|
||| ||||||| | ||||||| || |||| |||| ||||||| ||| |||||||| |||| ||||| ||||| |
|
|
| T |
30132734 |
agcttcaagtttcaaaacatcttccaattgaaagttattgaatgtaaaacccttaatcatgtccttcctctctc |
30132661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 30082351 - 30082547
Alignment:
| Q |
24 |
ttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaaggtctacaagc |
123 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||||||| | ||| |||||| ||||||||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
30082351 |
ttccatctaatgttcttgataaattacagaagctggagacaatgactgtaacagattgtcctaatctggaagttgtgttcgaaacacaaggtctaaaagc |
30082450 |
T |
|
| Q |
124 |
agatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaat |
220 |
Q |
| |
|
|||||| |||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
30082451 |
agatggtggtagacagataaggctggatatgcaattgaaaactctcactttgaaaaatttaccgatgttaaaacacatatggagtgggaatcctaat |
30082547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 30280381 - 30280590
Alignment:
| Q |
15 |
caaaggtatttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaagg |
114 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||| ||||||| | ||| | ||| |||||||||||| || ||||| ||||||||| ||||||| |
|
|
| T |
30280381 |
caaatgtatttccatcttatgttcttgataaattacagaatctggagagattgactataagtgattgtcctgcactagaagtagtatttgaagcacaagg |
30280480 |
T |
|
| Q |
115 |
tctacaagcagatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaat |
214 |
Q |
| |
|
|||| ||||||| || ||| || | ||| |||||||| |||||| ||||||||||||||| |||||||| | |||| || |||||| |||||||| |
|
|
| T |
30280481 |
tctaaaagcagacgggagtagacagatgaggctggatatgaaattgagaactctcactttgaaaaatttaccatcgctgaaacatatatggaatgggaat |
30280580 |
T |
|
| Q |
215 |
cctaatgaaa |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
30280581 |
cctaatgaaa |
30280590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 30069011 - 30069249
Alignment:
| Q |
15 |
caaaggtatttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaagg |
114 |
Q |
| |
|
|||| ||| |||| |||||||| || ||||||| ||||| || |||| ||||| | || | ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
30069011 |
caaatgtaattccatcttatgtgcttaataaattacagaatctcgagatagtgactatagataattgtcccacactggaagttgtatttgaaacacaagg |
30069110 |
T |
|
| Q |
115 |
tctacaagcagatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaat |
214 |
Q |
| |
|
| || |||||||||| |||| || |||| |||| ||||| |||| |||||||| |||||| ||||||| ||||||| || |||||| ||||||| |
|
|
| T |
30069111 |
tttaaaagcagatggtggtagacagacaaggctggaaatgcagttgagaactctcagtttgaaacatttaccaatgttgagacatatatggagtgggaat |
30069210 |
T |
|
| Q |
215 |
cctaatgaaagcatcaagttccgaaacatcagcctattg |
253 |
Q |
| |
|
|||||||||||| ||| ||| | |||| || |||||||| |
|
|
| T |
30069211 |
cctaatgaaagcttcatgtttcaaaacctctgcctattg |
30069249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 43 - 297
Target Start/End: Original strand, 30172858 - 30173112
Alignment:
| Q |
43 |
taaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaaggtctacaagcagatggaggtatgcatgta |
142 |
Q |
| |
|
|||||| ||||| ||||||| ||||| |||| |||||||||||| || ||| |||||||||||||||| ||||| || |||| || |||| || | |
|
|
| T |
30172858 |
taaattacagaatctggagacagtgactgtatctgattgtcctgtactcgaacttgtatttgaaacacagagtctaaaaccagacggtggtagacaaaca |
30172957 |
T |
|
| Q |
143 |
aggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaatgaaagcatcaagttccgaaaca |
242 |
Q |
| |
|
|| |||| ||||||||| |||||||||| |||| ||||||||||| |||| ||||||||| |||||||||||| ||| | ||||||| | ||||| |
|
|
| T |
30172958 |
agtctggaaatgcaattgcgaactctcactctgaaacatttaccgatgctgaaacacatatggagcgggaatcctaataaaatcttcaagtttcaaaaca |
30173057 |
T |
|
| Q |
243 |
tcagcctattgggagttgttgaatgcaaagcccttaattatgttcttcccctctc |
297 |
Q |
| |
|
|| ||| |||| |||| |||||||||| ||||||| ||||| |||| ||||| |
|
|
| T |
30173058 |
tctgccaattgaaagttactgaatgcaaaaaccttaatcatgtttttcctctctc |
30173112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 30183271 - 30183138
Alignment:
| Q |
92 |
gaagttgtatttgaaacacaaggtctacaagcagatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgt |
191 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| || |||| || || | |||| |||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
30183271 |
gaagttgtatttgaaacacaaggtctaaaagtagacggtggtagacagacaaagctggaaatgcaattgagaactctcactttgaaccatttaccgatgc |
30183172 |
T |
|
| Q |
192 |
tgaagcacatatggtatgggaatcctaatgaaag |
225 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||| |
|
|
| T |
30183171 |
tgaaacacatttggagtgggaatcctaatgaaag |
30183138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 30791073 - 30791280
Alignment:
| Q |
15 |
caaaggtatttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaagg |
114 |
Q |
| |
|
|||| ||| |||| |||||||| || ||||||| ||||| ||||||| |||| | || || ||||||| | || ||||||||||||||||||||||| |
|
|
| T |
30791073 |
caaatgtaattccatcttatgtgcttaataaattacagaatctggagattgtgactatatctaattgtcccacactagaagttgtatttgaaacacaagg |
30791172 |
T |
|
| Q |
115 |
tctacaagcagatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaat |
214 |
Q |
| |
|
| || ||||| || | |||| || || |||| |||||||||| ||||||||||||||| |||||||| ||| ||||||| |||||| ||||||| |
|
|
| T |
30791173 |
tttaaaagcaaatagtggtagacagacgcggctggaaatgcaattgagaactctcactttgaaaaatttaccaatgctgaagcaaatatggagtgggaat |
30791272 |
T |
|
| Q |
215 |
cctaatga |
222 |
Q |
| |
|
|||||||| |
|
|
| T |
30791273 |
cctaatga |
30791280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 30252916 - 30253140
Alignment:
| Q |
20 |
gtatttccgtcttatgttctggataaattgcagaagctggagaaagtgattgtaactgattgtcctgctctggaagttgtatttgaaacacaaggtctac |
119 |
Q |
| |
|
|||||||| |||||||| || |||||||| ||||| |||||| | ||| ||||| |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
30252916 |
gtatttccatcttatgtgcttgataaattacagaatttggagacactgactgtaagtgattgtcctgccttggaagttgtatttgaaatgaaaggtctaa |
30253015 |
T |
|
| Q |
120 |
aagcagatggaggtatgcatgtaaggttggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaa |
219 |
Q |
| |
|
|||||||| | |||| || ||| |||| ||||||||| ||| ||||||||||| ||||||| | | || ||||||||| | |||||||||| |
|
|
| T |
30253016 |
aagcagattgtggtagacaatcgaggctggaaatgcaattgggaaccctcactttgaaacatttaccattacttaaacacatatggagttggaatcctaa |
30253115 |
T |
|
| Q |
220 |
tgaaagcatcaagttccgaaacatc |
244 |
Q |
| |
|
|||||| ||||||| | ||||||| |
|
|
| T |
30253116 |
tgaaagattcaagtttcaaaacatc |
30253140 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 30151362 - 30151441
Alignment:
| Q |
147 |
tggatatgcaattgaaaactctcactttgaagaatttaccgatgttgaagcacatatggtatgggaatcctaatgaaagc |
226 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||| | |||| || |||||| |||||||||||||||||||| |
|
|
| T |
30151362 |
tggatatgaaattgagaactctcactttgaaaaatttaccatcgctgaaacatatatggaatgggaatcctaatgaaagc |
30151441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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