View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472_low_5 (Length: 247)
Name: NF2472_low_5
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48949067 - 48948835
Alignment:
| Q |
1 |
attgatatgacatttggtgctttaagctagcctagagtttgaggaattattgtgtgtattatacatgaatgatgttttgttcccttgcttgatgtgnnnn |
100 |
Q |
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| T |
48949067 |
attgatatgacatttggtgctttaagctagcctagagtttgaggaattattgtgtgtattatatatgaatgatgttttgttcccttgcttgatgtgtttt |
48948968 |
T |
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| Q |
101 |
nnnnagggtataatagtttctaaagatttagttgagattgatgatctttaggatgcaaccttgtaggttggagtaccttttggtacttttatatatggag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48948967 |
t---agggtataatagtttctaaagatttagttgagattgatgatctttaggatgcaaccttgtaggttggagtaccttttggtacttt----tatggag |
48948875 |
T |
|
| Q |
201 |
atggtcttatgttgtcttatagtttccttatttgcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
48948874 |
atggtcttatgttgtcttatagtttccttatttgcctttg |
48948835 |
T |
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