View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2472_low_6 (Length: 240)
Name: NF2472_low_6
Description: NF2472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2472_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 48949336 - 48949113
Alignment:
| Q |
18 |
aaaaaggggggacattgtttattttatgcttaggggtgagaaacaccatgcatcaatttatttagtggttgtttggttctatggtgggagcacaaatatc |
117 |
Q |
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| T |
48949336 |
aaaaaggggggacattgtttattttatgcttaggggtgagaaacatcatgcatcaatttatttagtggttgtttggttctacggtggaagcataaatatc |
48949237 |
T |
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| Q |
118 |
acatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggctttgggcagaacgtgcgtctatgcttagtgcaccgcaaaaagaaacaaag |
216 |
Q |
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| T |
48949236 |
acatcccaatgctcaactaccgtgatttttaagaagctcaaaatagtggctttgggcagaacgtgcgtctatgcttagtgcaccgcaaaaagaaacaaag |
48949137 |
T |
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| Q |
217 |
cattagtcgagatattctatttct |
240 |
Q |
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| T |
48949136 |
cattagtcgagatattttatttct |
48949113 |
T |
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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 15247940 - 15248072
Alignment:
| Q |
82 |
gtggttgtttggttctatggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggctttgggcagaacgt |
180 |
Q |
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| T |
15247940 |
gtggctgtttggtttggtggtgggagcacaaatatcaggtcccaatgctccaccaccgtgatttttatgaagcttaaaattgtggctttaggcaaaacgt |
15248039 |
T |
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| Q |
181 |
gcgtctatgcttagtgcaccgcaaaaagaaaca |
213 |
Q |
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| T |
15248040 |
gcgtctgtgctcggtgcaccgcaaaaataaaca |
15248072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 28024439 - 28024306
Alignment:
| Q |
81 |
agtggttgtttggttctatggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggctttgggcagaacg |
179 |
Q |
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| T |
28024439 |
agtggctgtttggtttggtggtgggagcacaaatatcgcgtcccaatgctccactgccgtgatttttatgaagcttaaaattgtggatttttgcaaaacg |
28024340 |
T |
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| Q |
180 |
tgcgtctatgcttagtgcaccgcaaaaagaaaca |
213 |
Q |
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| T |
28024339 |
tgcgtctgtgcttggtgcatcgcacaaacaaaca |
28024306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 503808 - 503699
Alignment:
| Q |
77 |
atttagtggttgtttggttctatggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggctttgggcag |
175 |
Q |
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|||| ||| |||||||||| |||||||| || ||||||| | |||||||||||||| || ||||||||| ||||||||||||||| | ||| ||| |
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| T |
503808 |
atttcgtgattgtttggtttggtggtgggaacaaaaatatcgcgtcccaatgctcaaccactgtgatttttatgaagctcaaaatagtagatttaagcaa |
503709 |
T |
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| Q |
176 |
aacgtgcgtc |
185 |
Q |
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| T |
503708 |
aacgtgcgtc |
503699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 32274531 - 32274445
Alignment:
| Q |
78 |
tttagtggttgtttggttctatggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagt |
163 |
Q |
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| T |
32274531 |
tttagtggttgtttggtttggtcgtggaaacaaaaatatcacgtcccaatgctcaactaccgtggtttttatgaaactcgaaatagt |
32274445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 34785091 - 34785019
Alignment:
| Q |
98 |
atggtgggagcacaaatatcacatcccaatgctcaactacc-tgatttttaagaagctcaaaatagtggcttt |
169 |
Q |
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|||||||||||| ||||| ||| |||||||||| | ||||| |||||||| ||||||| ||||| || ||||| |
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| T |
34785091 |
atggtgggagcataaataccacttcccaatgctaatctaccgtgatttttgagaagcttaaaattgtagcttt |
34785019 |
T |
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