View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_high_12 (Length: 389)
Name: NF2473_high_12
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 980683 - 981046
Alignment:
| Q |
18 |
caatgtgcagggttgtttgtgaaaacaataacgaatatgtttttaatttacaaagtgtaagtcaaatatatacaatatgtaatatcaaacttcagaggta |
117 |
Q |
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| T |
980683 |
caatgtgcagggttgtttgtgaaaacaacaactaatatgtttttaatttacaatgtgtaagttaaatatatacaatatgtaatatcaaacttcagaggta |
980782 |
T |
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| Q |
118 |
cctacaattgggtaaaaaag--ctatacaaacttacaaccatgttttctgcatatttagttgaataggttctgtctttccttaaccaagttgtcactata |
215 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |
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| T |
980783 |
cctacaactgggtaaaaaaaatctatacaaacttacaaccatgttttctgcatatttagttgaataggttccgtctttcttcaaccaagttgtcactata |
980882 |
T |
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| Q |
216 |
acctcagctcgacaaatgggtcttctcaaatctgtctcctatcacattatgttaaagcaaagaaaaagttatagtatggtaggtaacctgaaactaaatt |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
980883 |
acctcagctcgacaaatgggtcttctcaattctgtctcctatcatattatgttaaagcaaagaaaaagttagagtatgataggtaacctgaaactaaatt |
980982 |
T |
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| Q |
316 |
tgcaaaaatacaaccaaaatatgattct-cacattagaacaaaccatttcgtacgccctcctttg |
379 |
Q |
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||||||||||| |||||||||||||| | |||||| |||| |||||||||||| ||||||||||| |
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| T |
980983 |
tgcaaaaatactaccaaaatatgattttacacattggaac-aaccatttcgtatgccctcctttg |
981046 |
T |
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