View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2473_high_13 (Length: 364)
Name: NF2473_high_13
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 40771403 - 40771713
Alignment:
| Q |
16 |
catttcatatcctaccacctaatctgggtaattttctcaaattaaaaaaccatgagtacttgaggttatgtggcagttcaaatactatcattgtttgcaa |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
40771403 |
catttcagatcctaccacctaatctgggtaattttctcaaattaaaaaactatgagtacttgaggttatgtggcagctcaaatactatcactgtttgcaa |
40771502 |
T |
|
| Q |
116 |
attgatattcaaaatcgatcctgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgaccaattggatatatccaaatagc |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40771503 |
attgatattcaaaatcgatcccgaaaataatacaacatctgtcaccattgcaagaggatggagagcattttgcttgaccaatcggatatatccaaatagc |
40771602 |
T |
|
| Q |
216 |
atacttgagtttaagtgcgactctatcatggctaaaaatattgtttccgtctccaaattttctagacgttattacaatttcaataataatactatatgta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
40771603 |
atacttgagtttaagtgcgactctatcatggctaaaaatattgtttccgtctccaaattttctagacgttattaaaatttcaataatactactatatgta |
40771702 |
T |
|
| Q |
316 |
atattattatt |
326 |
Q |
| |
|
||||||||||| |
|
|
| T |
40771703 |
atattattatt |
40771713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 8331676 - 8331367
Alignment:
| Q |
16 |
catttcatatcctaccacctaatctgggtaattttctcaaattaaaaaaccatgagtacttgaggttatgtggcagttcaaatactatcattgtttgcaa |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
8331676 |
catttcagatcctaccacctaatctgggtaattttctcaaattaaaaaaccatgagtacttgaggttatgtggcagctcaaatactatcactctttgcaa |
8331577 |
T |
|
| Q |
116 |
attgatattcaaaatcgatcctgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgaccaattggatatatccaaatagc |
215 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
8331576 |
attgatattcaaaatgaatcccgaaaataatacaacatctgtgaccattgcaagaggatggagagcattttgcttgaccaatcagatatatccaaatagc |
8331477 |
T |
|
| Q |
216 |
atacttgagtttaagtgcgactctatcatggctaaaaatattgtttccgtctccaaattttctagacgttattacaatttcaataataatactatatgta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| | |
|
|
| T |
8331476 |
atacttgagtttaagtgcgactctatcatggct-aaaatattgtttccgtctccaaattttctagacgttattaaaatttcaataatactaccatatgca |
8331378 |
T |
|
| Q |
316 |
atattattatt |
326 |
Q |
| |
|
||||||||||| |
|
|
| T |
8331377 |
atattattatt |
8331367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 26231358 - 26231537
Alignment:
| Q |
16 |
catttcatatcctaccacctaatctgggtaattttctcaaattaaaaaaccatgagtacttgaggttatgtggcagttcaaatactatcattgtttgcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
26231358 |
catttcatatcctaccacctaatctgggtaattttctcaaatcaaaaaaccatgagtacttgaggttatgtggcagttctaatactatcactgtttgcaa |
26231457 |
T |
|
| Q |
116 |
attgatattcaaaatcgatcctgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgacca |
195 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26231458 |
attgatattcaaaatcgatcccgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgacca |
26231537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 33550982 - 33551161
Alignment:
| Q |
16 |
catttcatatcctaccacctaatctgggtaattttctcaaattaaaaaaccatgagtacttgaggttatgtggcagttcaaatactatcattgtttgcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33550982 |
catttcatatcctaccacctaatctgggtaattttctccaatcaaaaaaccatgagtacttgaggttatgtggcagttcaaatactatcactgtttgcaa |
33551081 |
T |
|
| Q |
116 |
attgatattcaaaatcgatcctgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgacca |
195 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33551082 |
attgatattcaaaatcgatcccgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgacca |
33551161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 26231540 - 26231581
Alignment:
| Q |
312 |
tgtaatattattattctcctcttttctttaaactatatacta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26231540 |
tgtaatattattattctcctcttttctttaaactatatacta |
26231581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 33551164 - 33551205
Alignment:
| Q |
312 |
tgtaatattattattctcctcttttctttaaactatatacta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33551164 |
tgtaatattattattctcctcttttctttaaactatatacta |
33551205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 4684281 - 4684102
Alignment:
| Q |
16 |
catttcatatcctaccacctaatctgggtaattttctcaaattaaaaaaccatgagtacttgaggttatgtggcagttcaaatactatcattgtttgcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
4684281 |
catttcatatcctaccacctaatctgggtaattttctcaaatcaaaaaaccatgagtacttgaggttatgtggcagttctaatactatcactgtttgcaa |
4684182 |
T |
|
| Q |
116 |
attgatattcaaaatcgatcctgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgacca |
195 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684181 |
attgatattcaaaatcgatcccgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgacca |
4684102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 4684099 - 4684058
Alignment:
| Q |
312 |
tgtaatattattattctcctcttttctttaaactatatacta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684099 |
tgtaatattattattctcctcttttctttaaactatatacta |
4684058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 10233315 - 10233157
Alignment:
| Q |
168 |
agaggatggacaacattttgcttgaccaattggatatatccaaatagcatacttgagtttaagtgcgactctatcatggctaaaaatattgtttccgtct |
267 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10233315 |
agaggatggagagcattttgcttgaccaatcggatatatccaaatagcatacttgagtttaagtgcgactctatcatggctaaaaacattgtttccgtct |
10233216 |
T |
|
| Q |
268 |
ccaaattttctagacgttattacaatttcaataataatactatatgtaatattattatt |
326 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10233215 |
ccaaattttctagacgttattaaaatttcaataatactactatatgtaatattattatt |
10233157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 310
Target Start/End: Original strand, 19777826 - 19778108
Alignment:
| Q |
27 |
ctaccacctaatctgggtaattttctcaaattaaaaaaccatgagtacttgaggttatgtggcagttcaaatactatcattgtttgcaaattgatattca |
126 |
Q |
| |
|
||||||||| |||| ||| |||| || ||| ||||||||||||||||| | |||| ||||||| ||||| ||||||| | ||||||||||| | ||| |
|
|
| T |
19777826 |
ctaccacctgatcttggtcatttccttaaactaaaaaaccatgagtacctacggttgtgtggcacatcaaacactatcactatttgcaaattgctcttcg |
19777925 |
T |
|
| Q |
127 |
aaatcgatcctgaaaataatacaacatctgtgaccattgcaagaggatggacaacattttgcttgaccaattggatatatccaaatagcatacttgagtt |
226 |
Q |
| |
|
|| ||| |||||| |||| ||||| |||||| ||| | ||||||||| ||||||||||||| || | ||||||||| |||||||||| | || |
|
|
| T |
19777926 |
aagaggatgctgaaagtaatgcaacaactgtgatcataggtcgaggatggaggccattttgcttgacaaaccgtatatatccagatagcatactacaatt |
19778025 |
T |
|
| Q |
227 |
taagtgcgactctatcatggctaaaaatattgtttccgtctccaaattttctagacgttattacaatttcaataataatactat |
310 |
Q |
| |
|
|| ||| ||||| |||||||||||||| ||||| ||||| | |||| |||| ||||||||||| ||||| | ||||| |||||| |
|
|
| T |
19778026 |
tatgtgtgactcaatcatggctaaaaacattgtctccgtttgcaaagtttcgagacgttatta-aattttactaatagtactat |
19778108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University