View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_high_17 (Length: 307)
Name: NF2473_high_17
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 14373095 - 14373373
Alignment:
| Q |
13 |
aatatatagtgtatttaatatattgannnnnnnnaggagtttaatatattgattttataaatgtatatttaattttatcaagtatcgatgtaaatacaaa |
112 |
Q |
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| T |
14373095 |
aatatatagtgtatttaatatattgattttttttaggagtttaatatattgattttataaatgtatatttaattttatcaagtatcgatgtaaatacaaa |
14373194 |
T |
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| Q |
113 |
tttgaagataataaaatgagagttttgtacatagtattaattccattattcaaatacaattgnnnnnnnnntagcaattaatatactannnnnnnnaagg |
212 |
Q |
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| T |
14373195 |
tttgaagataataaaatgagagttttgtacatagtattaattccattattcaaatacaattgaaaaaaaaaaagcaattaatatactattttttttaagg |
14373294 |
T |
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| Q |
213 |
aagcaattaatatactatattgaaaattagattatgtataaaagaaattcaagttagttgaatcccacgggctcattag |
291 |
Q |
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| T |
14373295 |
aagcaattaatatactatattgaaaattagattatgtataaaagaaattcaagttagttgaatcccacgggctcattag |
14373373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 8704130 - 8704084
Alignment:
| Q |
90 |
tcaagtatcgatgtaaatacaaatttgaagataataaaatgagagtt |
136 |
Q |
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| T |
8704130 |
tcaagtattgatgtaaatacaaattcaaagataataaaatgagagtt |
8704084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 24754337 - 24754279
Alignment:
| Q |
232 |
ttgaaaattagattatgtataaaagaaattcaagttagttgaatcccacgggctcattag |
291 |
Q |
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||||||||||||| |||| ||||| || || |||||| |||||||||||||||||||||| |
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| T |
24754337 |
ttgaaaattagatcatgtctaaaa-aatttgaagttacttgaatcccacgggctcattag |
24754279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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