View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2473_high_26 (Length: 241)
Name: NF2473_high_26
Description: NF2473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2473_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 42983916 - 42984080
Alignment:
| Q |
61 |
aaaacctcatggattcttactagagatttacaactagtgcaaccttccaggattcctcaagacattcaaagaccttgtcatcaatgtacatcatagggca |
160 |
Q |
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| T |
42983916 |
aaaacctcatggattcttactagagatttacaactagtgcaaccttccaggattcctcaagacattcaaagaccttgtcatcaatgtacatcatagggca |
42984015 |
T |
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| Q |
161 |
tgagcgattctcgtcttgacaataaagttatgcaagattctctttgtaatgtggagtcatggcga |
225 |
Q |
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| T |
42984016 |
tgagcgattctcgtcttgacaataaagttacgcaagattctctttgtaatgtggagtcatggcga |
42984080 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 42983826 - 42983903
Alignment:
| Q |
1 |
acaatcatcctcaagatcaaatttgaccatggtgaaaccattgccaatatccatgatttcaaaacctcatggattctt |
78 |
Q |
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| T |
42983826 |
acaatcatcctcaagatcaaatttgaccatggtgaaaccattgccaatatccatgatttcaaaacctcatggattctt |
42983903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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